vcRNA Database

Search : MERS-CoV

Find items: 3198

Id	Virus	Genome	Strand	Start	End	Length	Avg_CPM	Avg_junction_reads	Gene	Sample
vc_MERS-CoV_1	MERS-CoV	NC_019843.3	-	1503	29635	28132	4.277425247	2.0	NA	Calu-3
vc_MERS-CoV_2	MERS-CoV	NC_019843.3	+	1683	2332	649	4.157236783	51.0	orf1ab	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_3	MERS-CoV	NC_019843.3	-	5739	6156	417	3.820794967	46.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_4	MERS-CoV	NC_019843.3	+	13538	13930	392	6.561582056	82.0	orf1ab	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_5	MERS-CoV	NC_019843.3	+	13579	13766	187	9.689079158	101.8	orf1ab	Calu-3;Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_6	MERS-CoV	NC_019843.3	+	13579	13896	317	43.19013867	486.0	orf1ab	Calu-3;Calu-3;Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_7	MERS-CoV	NC_019843.3	-	14617	14856	239	1.244127735	3.25	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_8	MERS-CoV	NC_019843.3	-	16701	16908	207	2.421357551	22.25	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_9	MERS-CoV	NC_019843.3	-	22764	22973	209	7.704867937	105.75	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_10	MERS-CoV	NC_019843.3	-	22917	23096	179	5.694822121	67.25	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_11	MERS-CoV	NC_019843.3	-	24882	25243	361	7.290594915	83.5	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_12	MERS-CoV	NC_019843.3	-	24936	25106	170	4.277425247	2.0	NA	Calu-3
vc_MERS-CoV_13	MERS-CoV	NC_019843.3	-	26231	27183	952	6.41613787	3.0	NA	Calu-3
vc_MERS-CoV_14	MERS-CoV	NC_019843.3	-	26231	27400	1169	4.277425247	2.0	NA	Calu-3
vc_MERS-CoV_15	MERS-CoV	NC_019843.3	-	28756	29146	390	55.28138111	810.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_16	MERS-CoV	NC_019843.3	+	29131	29838	707	36.30647949	590.6666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_17	MERS-CoV	NC_019843.3	+	29170	29760	590	6.41613787	3.0	N	Calu-3
vc_MERS-CoV_18	MERS-CoV	NC_019843.3	+	29170	29911	741	4.440662472	54.5	N	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_19	MERS-CoV	NC_019843.3	-	29211	29504	293	4.020469887	49.75	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_20	MERS-CoV	NC_019843.3	-	29211	29545	334	14.31883757	156.4	NA	Calu-3;Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_21	MERS-CoV	NC_019843.3	-	29211	29549	338	11.00086901	152.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_22	MERS-CoV	NC_019843.3	-	29211	29644	433	16.5713273	188.5	NA	Calu-3;Calu-3;Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_23	MERS-CoV	NC_019843.3	-	29211	29879	668	6.672981414	57.75	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_24	MERS-CoV	NC_019843.3	-	29645	29952	307	21.29402834	274.8	NA	Calu-3;Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_25	MERS-CoV	NC_019843.3	-	29710	29952	242	4.508551865	54.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_26	MERS-CoV	NC_019843.3	-	1262	29649	28387	31.99975441	478.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_27	MERS-CoV	NC_019843.3	-	7484	7803	319	5.535114893	43.0	NA	Calu-3;Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_28	MERS-CoV	NC_019843.3	+	13538	13906	368	6.135638231	71.5	orf1ab	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_29	MERS-CoV	NC_019843.3	-	24252	25243	991	4.187594794	27.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_30	MERS-CoV	NC_019843.3	-	25894	27138	1244	13.47995026	4.0	NA	Calu-3
vc_MERS-CoV_31	MERS-CoV	NC_019843.3	-	26231	26517	286	10.12940902	134.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_32	MERS-CoV	NC_019843.3	-	28756	29107	351	11.69564772	148.75	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_33	MERS-CoV	NC_019843.3	+	28856	29911	1055	13.56139005	151.75	N;orf8b	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_34	MERS-CoV	NC_019843.3	+	1825	2330	505	29.64745078	446.5	orf1ab	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_35	MERS-CoV	NC_019843.3	+	6427	6654	227	2.833945961	12.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_36	MERS-CoV	NC_019843.3	-	11132	11348	216	8.478439163	110.0	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_37	MERS-CoV	NC_019843.3	+	16518	17504	986	25.84334599	434.6666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_38	MERS-CoV	NC_019843.3	-	25049	25243	194	14.01693109	201.25	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_39	MERS-CoV	NC_019843.3	+	29197	29911	714	27.62478386	351.25	N	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_40	MERS-CoV	NC_019843.3	-	29645	29879	234	8.011748983	94.25	NA	Calu-3;Calu-3;Calu-3;Calu-3
vc_MERS-CoV_41	MERS-CoV	NC_019843.3	+	9	567	558	0.432852465	6.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_42	MERS-CoV	NC_019843.3	+	9	584	575	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_43	MERS-CoV	NC_019843.3	+	9	27061	27052	0.396745081	7.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_44	MERS-CoV	NC_019843.3	+	9	28121	28112	0.226711475	4.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_45	MERS-CoV	NC_019843.3	+	16	1537	1521	0.736812293	13.0	orf1ab	Calu-3
vc_MERS-CoV_46	MERS-CoV	NC_019843.3	+	16	1760	1744	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_47	MERS-CoV	NC_019843.3	+	16	1845	1829	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_48	MERS-CoV	NC_019843.3	+	16	1974	1958	3.287316383	58.0	orf1ab	Calu-3
vc_MERS-CoV_49	MERS-CoV	NC_019843.3	+	16	2094	2078	1.076879505	19.0	orf1ab	Calu-3
vc_MERS-CoV_50	MERS-CoV	NC_019843.3	+	16	2250	2234	4.846321222	70.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_51	MERS-CoV	NC_019843.3	+	16	2332	2316	2.663859827	47.0	orf1ab	Calu-3
vc_MERS-CoV_52	MERS-CoV	NC_019843.3	+	16	2743	2727	1.813691797	32.0	orf1ab	Calu-3
vc_MERS-CoV_53	MERS-CoV	NC_019843.3	+	16	5202	5186	0.510100818	9.0	orf1ab	Calu-3
vc_MERS-CoV_54	MERS-CoV	NC_019843.3	+	16	28453	28437	0.396745081	7.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_55	MERS-CoV	NC_019843.3	-	30	25616	25586	1.020201636	18.0	NA	Calu-3
vc_MERS-CoV_56	MERS-CoV	NC_019843.3	+	50	567	517	1.586980323	28.0	orf1ab	Calu-3
vc_MERS-CoV_57	MERS-CoV	NC_019843.3	-	53	487	434	0.79609492	14.5	NA	Calu-3;Calu-3
vc_MERS-CoV_58	MERS-CoV	NC_019843.3	-	226	545	319	0.85016803	15.0	NA	Calu-3
vc_MERS-CoV_59	MERS-CoV	NC_019843.3	-	244	1231	987	5.384397524	95.0	NA	Calu-3
vc_MERS-CoV_60	MERS-CoV	NC_019843.3	+	310	537	227	0.756901682	12.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_61	MERS-CoV	NC_019843.3	+	310	609	299	3.782237257	62.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_62	MERS-CoV	NC_019843.3	+	310	29130	28820	0.680134424	12.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_63	MERS-CoV	NC_019843.3	-	352	780	428	0.363847247	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_64	MERS-CoV	NC_019843.3	-	352	810	458	0.148578276	2.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_65	MERS-CoV	NC_019843.3	-	352	1231	879	0.329344639	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_66	MERS-CoV	NC_019843.3	+	394	18247	17853	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_67	MERS-CoV	NC_019843.3	-	399	597	198	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_68	MERS-CoV	NC_019843.3	-	399	1231	832	4.024128676	71.0	NA	Calu-3
vc_MERS-CoV_69	MERS-CoV	NC_019843.3	-	399	6156	5757	17.45678355	308.0	NA	Calu-3
vc_MERS-CoV_70	MERS-CoV	NC_019843.3	-	469	707	238	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_71	MERS-CoV	NC_019843.3	-	484	29405	28921	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_72	MERS-CoV	NC_019843.3	+	532	1112	580	1.416946717	25.0	orf1ab	Calu-3
vc_MERS-CoV_73	MERS-CoV	NC_019843.3	+	532	1180	648	10.20201636	180.0	orf1ab	Calu-3
vc_MERS-CoV_74	MERS-CoV	NC_019843.3	+	532	29733	29201	3.910772938	69.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_75	MERS-CoV	NC_019843.3	-	635	810	175	0.200962024	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_76	MERS-CoV	NC_019843.3	-	692	1231	539	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_77	MERS-CoV	NC_019843.3	-	741	1502	761	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_78	MERS-CoV	NC_019843.3	-	746	1228	482	3.125264117	49.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_79	MERS-CoV	NC_019843.3	-	756	28740	27984	12.46913111	220.0	NA	Calu-3
vc_MERS-CoV_80	MERS-CoV	NC_019843.3	-	773	1083	310	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_81	MERS-CoV	NC_019843.3	-	773	1140	367	9.041658845	146.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_82	MERS-CoV	NC_019843.3	-	773	21217	20444	4.151428695	76.5	NA	Calu-3;Calu-3
vc_MERS-CoV_83	MERS-CoV	NC_019843.3	-	866	1231	365	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_84	MERS-CoV	NC_019843.3	+	871	1112	241	1.133557373	20.0	orf1ab	Calu-3
vc_MERS-CoV_85	MERS-CoV	NC_019843.3	-	1007	1231	224	1.14305592	21.0	NA	Calu-3;Calu-3
vc_MERS-CoV_86	MERS-CoV	NC_019843.3	-	1007	29148	28141	0.684883697	12.5	NA	Calu-3;Calu-3
vc_MERS-CoV_87	MERS-CoV	NC_019843.3	-	1056	1205	149	1.893675014	28.5	NA	Calu-3;Calu-3
vc_MERS-CoV_88	MERS-CoV	NC_019843.3	-	1056	1220	164	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_89	MERS-CoV	NC_019843.3	-	1056	1231	175	4.816576666	79.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_90	MERS-CoV	NC_019843.3	-	1085	1228	143	0.572264482	9.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_91	MERS-CoV	NC_019843.3	-	1085	1502	417	0.990518445	15.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_92	MERS-CoV	NC_019843.3	-	1085	29210	28125	30.2738617	488.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_93	MERS-CoV	NC_019843.3	-	1142	1502	360	0.741561566	13.5	NA	Calu-3;Calu-3
vc_MERS-CoV_94	MERS-CoV	NC_019843.3	-	1142	28635	27493	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_95	MERS-CoV	NC_019843.3	-	1142	28687	27545	0.599866894	11.0	NA	Calu-3;Calu-3
vc_MERS-CoV_96	MERS-CoV	NC_019843.3	-	1142	29210	28068	22.20434805	356.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_97	MERS-CoV	NC_019843.3	-	1179	1552	373	0.461768098	7.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_98	MERS-CoV	NC_019843.3	-	1200	1552	352	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_99	MERS-CoV	NC_019843.3	-	1200	28687	27487	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_100	MERS-CoV	NC_019843.3	-	1227	1502	275	0.637822147	10.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_101	MERS-CoV	NC_019843.3	-	1227	2152	925	0.389049322	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_102	MERS-CoV	NC_019843.3	-	1229	1418	189	0.557665981	9.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_103	MERS-CoV	NC_019843.3	-	1229	1421	192	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_104	MERS-CoV	NC_019843.3	-	1229	1461	232	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_105	MERS-CoV	NC_019843.3	-	1229	1533	304	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_106	MERS-CoV	NC_019843.3	-	1229	1540	311	0.492103224	8.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_107	MERS-CoV	NC_019843.3	-	1229	1547	318	1.219812994	21.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_108	MERS-CoV	NC_019843.3	-	1229	1651	422	0.137405643	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_109	MERS-CoV	NC_019843.3	-	1229	1671	442	0.194083511	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_110	MERS-CoV	NC_019843.3	-	1229	1814	585	3.127788548	52.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_111	MERS-CoV	NC_019843.3	-	1229	1832	603	0.736812293	13.0	NA	Calu-3
vc_MERS-CoV_112	MERS-CoV	NC_019843.3	-	1229	1861	632	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_113	MERS-CoV	NC_019843.3	-	1229	1950	721	6.085830261	111.5	NA	Calu-3;Calu-3
vc_MERS-CoV_114	MERS-CoV	NC_019843.3	-	1229	1969	740	5.923294926	95.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_115	MERS-CoV	NC_019843.3	-	1229	2145	916	17.40141411	253.0	NA	Calu-3;Calu-3
vc_MERS-CoV_116	MERS-CoV	NC_019843.3	-	1229	2237	1008	154.1007016	2239.5	NA	Calu-3;Calu-3
vc_MERS-CoV_117	MERS-CoV	NC_019843.3	-	1229	2311	1082	3.719450892	68.5	NA	Calu-3;Calu-3
vc_MERS-CoV_118	MERS-CoV	NC_019843.3	-	1229	2378	1149	12.44266756	197.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_119	MERS-CoV	NC_019843.3	-	1229	5950	4721	1803.051512	33107.5	NA	Calu-3;Calu-3
vc_MERS-CoV_120	MERS-CoV	NC_019843.3	-	1229	28703	27474	9.319436588	148.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_121	MERS-CoV	NC_019843.3	-	1229	29030	27801	1.983725403	35.0	NA	Calu-3
vc_MERS-CoV_122	MERS-CoV	NC_019843.3	-	1229	29148	27919	12.20905588	195.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_123	MERS-CoV	NC_019843.3	-	1229	29160	27931	43.18853593	762.0	NA	Calu-3
vc_MERS-CoV_124	MERS-CoV	NC_019843.3	-	1229	29280	28051	2.303728201	42.5	NA	Calu-3;Calu-3
vc_MERS-CoV_125	MERS-CoV	NC_019843.3	-	1229	29545	28316	13.10047199	211.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_126	MERS-CoV	NC_019843.3	-	1229	29549	28320	13.56639831	249.5	NA	Calu-3;Calu-3
vc_MERS-CoV_127	MERS-CoV	NC_019843.3	-	1229	29644	28415	15.62487819	286.5	NA	Calu-3;Calu-3
vc_MERS-CoV_128	MERS-CoV	NC_019843.3	-	1229	29649	28420	8.746781792	160.0	NA	Calu-3;Calu-3
vc_MERS-CoV_129	MERS-CoV	NC_019843.3	-	1229	29869	28640	2.798817417	51.5	NA	Calu-3;Calu-3
vc_MERS-CoV_130	MERS-CoV	NC_019843.3	-	1229	29879	28650	3.92823755	63.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_131	MERS-CoV	NC_019843.3	-	1262	1547	285	2.591928095	41.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_132	MERS-CoV	NC_019843.3	-	1262	1623	361	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_133	MERS-CoV	NC_019843.3	-	1262	1630	368	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_134	MERS-CoV	NC_019843.3	-	1262	1651	389	0.161455548	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_135	MERS-CoV	NC_019843.3	-	1262	1695	433	0.257644984	4.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_136	MERS-CoV	NC_019843.3	-	1262	1732	470	0.267954456	4.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_137	MERS-CoV	NC_019843.3	-	1262	1791	529	0.625489707	11.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_138	MERS-CoV	NC_019843.3	-	1262	1814	552	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_139	MERS-CoV	NC_019843.3	-	1262	1902	640	0.77550916	11.5	NA	Calu-3;Calu-3
vc_MERS-CoV_140	MERS-CoV	NC_019843.3	-	1262	2040	778	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_141	MERS-CoV	NC_019843.3	-	1262	2114	852	1.020201636	18.0	NA	Calu-3
vc_MERS-CoV_142	MERS-CoV	NC_019843.3	-	1262	2117	855	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_143	MERS-CoV	NC_019843.3	-	1262	2152	890	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_144	MERS-CoV	NC_019843.3	-	1262	2215	953	11.67564095	206.0	NA	Calu-3
vc_MERS-CoV_145	MERS-CoV	NC_019843.3	-	1262	2311	1049	5.10100818	90.0	NA	Calu-3
vc_MERS-CoV_146	MERS-CoV	NC_019843.3	-	1262	2451	1189	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_147	MERS-CoV	NC_019843.3	-	1262	28590	27328	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_148	MERS-CoV	NC_019843.3	-	1262	28631	27369	0.835616672	15.5	NA	Calu-3;Calu-3
vc_MERS-CoV_149	MERS-CoV	NC_019843.3	-	1262	28635	27373	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_150	MERS-CoV	NC_019843.3	-	1262	28732	27470	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_151	MERS-CoV	NC_019843.3	-	1262	28983	27721	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_152	MERS-CoV	NC_019843.3	-	1262	29095	27833	66.31310634	1170.0	NA	Calu-3
vc_MERS-CoV_153	MERS-CoV	NC_019843.3	-	1262	29118	27856	7.368122927	130.0	NA	Calu-3
vc_MERS-CoV_154	MERS-CoV	NC_019843.3	-	1262	29146	27884	76.00502189	1341.0	NA	Calu-3
vc_MERS-CoV_155	MERS-CoV	NC_019843.3	-	1262	29148	27886	117.0254344	1700.5	NA	Calu-3;Calu-3
vc_MERS-CoV_156	MERS-CoV	NC_019843.3	-	1262	29201	27939	2.040403272	36.0	NA	Calu-3
vc_MERS-CoV_157	MERS-CoV	NC_019843.3	-	1262	29280	28018	8.445002432	149.0	NA	Calu-3
vc_MERS-CoV_158	MERS-CoV	NC_019843.3	-	1262	29549	28287	5.611108998	99.0	NA	Calu-3
vc_MERS-CoV_159	MERS-CoV	NC_019843.3	-	1262	29703	28441	14.67956799	259.0	NA	Calu-3
vc_MERS-CoV_160	MERS-CoV	NC_019843.3	-	1262	29709	28447	31.9638995	587.0	NA	Calu-3;Calu-3
vc_MERS-CoV_161	MERS-CoV	NC_019843.3	-	1262	29742	28480	6.550896272	120.5	NA	Calu-3;Calu-3
vc_MERS-CoV_162	MERS-CoV	NC_019843.3	-	1272	1502	230	0.270522256	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_163	MERS-CoV	NC_019843.3	-	1272	29210	27938	4.009575207	62.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_164	MERS-CoV	NC_019843.3	-	1322	1502	180	1.154838437	18.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_165	MERS-CoV	NC_019843.3	-	1370	1552	182	3.462747026	51.0	NA	Calu-3;Calu-3
vc_MERS-CoV_166	MERS-CoV	NC_019843.3	+	1410	29921	28511	6.80134424	120.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_167	MERS-CoV	NC_019843.3	+	1457	1974	517	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_168	MERS-CoV	NC_019843.3	+	1499	1974	475	0.331489154	6.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_169	MERS-CoV	NC_019843.3	-	1503	1814	311	0.194083511	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_170	MERS-CoV	NC_019843.3	-	1503	1950	447	4.975141168	72.5	NA	Calu-3;Calu-3
vc_MERS-CoV_171	MERS-CoV	NC_019843.3	-	1503	1969	466	4.082015159	66.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_172	MERS-CoV	NC_019843.3	-	1503	2076	573	2.777215565	49.0	NA	Calu-3
vc_MERS-CoV_173	MERS-CoV	NC_019843.3	-	1503	2104	601	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_174	MERS-CoV	NC_019843.3	-	1503	2237	734	7.287708565	133.5	NA	Calu-3;Calu-3
vc_MERS-CoV_175	MERS-CoV	NC_019843.3	-	1503	2378	875	18.44177221	339.0	NA	Calu-3;Calu-3
vc_MERS-CoV_176	MERS-CoV	NC_019843.3	-	1503	5900	4397	19.91156801	365.5	NA	Calu-3;Calu-3
vc_MERS-CoV_177	MERS-CoV	NC_019843.3	-	1503	12675	11172	0.85016803	15.0	NA	Calu-3
vc_MERS-CoV_178	MERS-CoV	NC_019843.3	-	1503	27127	25624	2.76144018	50.5	NA	Calu-3;Calu-3
vc_MERS-CoV_179	MERS-CoV	NC_019843.3	-	1503	28703	27200	10.96343725	180.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_180	MERS-CoV	NC_019843.3	-	1503	29280	27777	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_181	MERS-CoV	NC_019843.3	-	1503	29952	28449	484.2503455	7758.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_182	MERS-CoV	NC_019843.3	+	1567	1974	407	1.019132341	16.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_183	MERS-CoV	NC_019843.3	-	1578	1950	372	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_184	MERS-CoV	NC_019843.3	+	1594	1868	274	3.970403741	54.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_185	MERS-CoV	NC_019843.3	+	1594	1910	316	0.678450154	12.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_186	MERS-CoV	NC_019843.3	+	1594	1955	361	2.333996649	38.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_187	MERS-CoV	NC_019843.3	+	1594	1958	364	1.781984322	32.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_188	MERS-CoV	NC_019843.3	+	1594	2005	411	2.455347425	36.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_189	MERS-CoV	NC_019843.3	+	1594	2129	535	0.340067212	6.0	orf1ab	Calu-3
vc_MERS-CoV_190	MERS-CoV	NC_019843.3	+	1594	2228	634	3.259134154	60.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_191	MERS-CoV	NC_019843.3	+	1594	2250	656	1.530302454	27.0	orf1ab	Calu-3
vc_MERS-CoV_192	MERS-CoV	NC_019843.3	+	1594	2284	690	0.434122318	8.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_193	MERS-CoV	NC_019843.3	+	1594	2330	736	7.294287179	116.6666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_194	MERS-CoV	NC_019843.3	+	1594	2332	738	24.51759055	401.3333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_195	MERS-CoV	NC_019843.3	+	1594	2354	760	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_196	MERS-CoV	NC_019843.3	+	1594	2723	1129	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_197	MERS-CoV	NC_019843.3	+	1594	3172	1578	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_198	MERS-CoV	NC_019843.3	+	1594	15887	14293	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_199	MERS-CoV	NC_019843.3	+	1594	27241	25647	1.586980323	28.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_200	MERS-CoV	NC_019843.3	+	1594	28685	27091	0.623456555	11.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N	Calu-3
vc_MERS-CoV_201	MERS-CoV	NC_019843.3	+	1594	29130	27536	1.020201636	18.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_202	MERS-CoV	NC_019843.3	+	1594	29766	28172	1.303590979	23.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_203	MERS-CoV	NC_019843.3	-	1598	1950	352	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_204	MERS-CoV	NC_019843.3	+	1616	1974	358	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_205	MERS-CoV	NC_019843.3	-	1667	1950	283	0.501983004	9.5	NA	Calu-3;Calu-3
vc_MERS-CoV_206	MERS-CoV	NC_019843.3	-	1667	1961	294	0.144284155	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_207	MERS-CoV	NC_019843.3	-	1667	2135	468	0.983744888	18.0	NA	Calu-3;Calu-3
vc_MERS-CoV_208	MERS-CoV	NC_019843.3	-	1667	2152	485	1.71022308	26.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_209	MERS-CoV	NC_019843.3	-	1667	2240	573	0.903208805	14.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_210	MERS-CoV	NC_019843.3	-	1667	2281	614	0.237322685	4.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_211	MERS-CoV	NC_019843.3	-	1667	2311	644	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_212	MERS-CoV	NC_019843.3	-	1667	2952	1285	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_213	MERS-CoV	NC_019843.3	-	1667	28687	27020	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_214	MERS-CoV	NC_019843.3	-	1667	29148	27481	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_215	MERS-CoV	NC_019843.3	-	1667	29163	27496	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_216	MERS-CoV	NC_019843.3	+	1683	1826	143	2.174547565	31.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_217	MERS-CoV	NC_019843.3	+	1683	1868	185	0.458903653	7.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_218	MERS-CoV	NC_019843.3	+	1683	1874	191	6.099359159	99.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_219	MERS-CoV	NC_019843.3	+	1683	1910	227	2.223786727	35.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_220	MERS-CoV	NC_019843.3	+	1683	1914	231	0.163600062	3.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_221	MERS-CoV	NC_019843.3	+	1683	1917	234	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_222	MERS-CoV	NC_019843.3	+	1683	1955	272	0.6406815	10.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_223	MERS-CoV	NC_019843.3	+	1683	1958	275	1.064372798	17.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_224	MERS-CoV	NC_019843.3	+	1683	2005	322	0.557364243	9.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_225	MERS-CoV	NC_019843.3	+	1683	2096	413	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_226	MERS-CoV	NC_019843.3	+	1683	2098	415	0.680134424	12.0	orf1ab	Calu-3
vc_MERS-CoV_227	MERS-CoV	NC_019843.3	+	1683	2129	446	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_228	MERS-CoV	NC_019843.3	+	1683	2197	514	0.646689214	9.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_229	MERS-CoV	NC_019843.3	+	1683	2228	545	2.439892083	39.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_230	MERS-CoV	NC_019843.3	+	1683	2232	549	1.193300245	22.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_231	MERS-CoV	NC_019843.3	+	1683	2302	619	0.319496727	4.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_232	MERS-CoV	NC_019843.3	+	1683	2330	647	3.06000819	48.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_233	MERS-CoV	NC_019843.3	+	1683	2723	1040	0.793490161	14.0	orf1ab	Calu-3
vc_MERS-CoV_234	MERS-CoV	NC_019843.3	+	1683	12568	10885	6.687988503	118.0	orf1ab	Calu-3
vc_MERS-CoV_235	MERS-CoV	NC_019843.3	+	1683	26752	25069	0.226711475	4.0	orf1ab;S;orf3;orf4a;orf4b	Calu-3
vc_MERS-CoV_236	MERS-CoV	NC_019843.3	+	1683	28650	26967	0.460316738	8.5	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N	Calu-3;Calu-3
vc_MERS-CoV_237	MERS-CoV	NC_019843.3	+	1683	28685	27002	2.210436878	39.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N	Calu-3
vc_MERS-CoV_238	MERS-CoV	NC_019843.3	+	1683	29842	28159	1.264989716	23.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_239	MERS-CoV	NC_019843.3	+	1683	29993	28310	1.133557373	20.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_240	MERS-CoV	NC_019843.3	-	1688	1950	262	1.786733595	33.0	NA	Calu-3;Calu-3
vc_MERS-CoV_241	MERS-CoV	NC_019843.3	-	1688	2152	464	1.465158723	23.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_242	MERS-CoV	NC_019843.3	-	1688	2240	552	1.14305592	21.0	NA	Calu-3;Calu-3
vc_MERS-CoV_243	MERS-CoV	NC_019843.3	-	1688	2281	593	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_244	MERS-CoV	NC_019843.3	-	1688	28689	27001	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_245	MERS-CoV	NC_019843.3	-	1714	2215	501	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_246	MERS-CoV	NC_019843.3	-	1714	2818	1104	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_247	MERS-CoV	NC_019843.3	+	1716	1974	258	0.569383446	10.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_248	MERS-CoV	NC_019843.3	+	1722	1974	252	5.704033571	91.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_249	MERS-CoV	NC_019843.3	-	1758	2315	557	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_250	MERS-CoV	NC_019843.3	-	1787	1969	182	0.257639892	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_251	MERS-CoV	NC_019843.3	-	1787	2215	428	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_252	MERS-CoV	NC_019843.3	-	1787	2281	494	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_253	MERS-CoV	NC_019843.3	-	1790	2152	362	0.652255734	12.0	NA	Calu-3;Calu-3
vc_MERS-CoV_254	MERS-CoV	NC_019843.3	-	1793	2315	522	0.405783384	7.5	NA	Calu-3;Calu-3
vc_MERS-CoV_255	MERS-CoV	NC_019843.3	-	1793	2337	544	5.497753261	97.0	NA	Calu-3
vc_MERS-CoV_256	MERS-CoV	NC_019843.3	-	1803	2240	437	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_257	MERS-CoV	NC_019843.3	-	1810	2152	342	0.45432307	7.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_258	MERS-CoV	NC_019843.3	+	1825	2228	403	0.72799114	11.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_259	MERS-CoV	NC_019843.3	+	1825	2232	407	0.566778687	10.0	orf1ab	Calu-3
vc_MERS-CoV_260	MERS-CoV	NC_019843.3	+	1825	2332	507	7.089025943	113.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_261	MERS-CoV	NC_019843.3	-	1832	2223	391	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_262	MERS-CoV	NC_019843.3	-	1832	2240	408	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_263	MERS-CoV	NC_019843.3	-	1832	2619	787	0.793490161	14.0	NA	Calu-3
vc_MERS-CoV_264	MERS-CoV	NC_019843.3	-	1839	2148	309	0.270522256	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_265	MERS-CoV	NC_019843.3	+	1842	29554	27712	0.113355737	2.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_266	MERS-CoV	NC_019843.3	-	1863	2311	448	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_267	MERS-CoV	NC_019843.3	-	1869	2240	371	0.829904374	13.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_268	MERS-CoV	NC_019843.3	-	1869	2311	442	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_269	MERS-CoV	NC_019843.3	-	1922	2135	213	3.003927039	53.0	NA	Calu-3
vc_MERS-CoV_270	MERS-CoV	NC_019843.3	-	1922	2148	226	0.318622066	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_271	MERS-CoV	NC_019843.3	-	1922	2170	248	0.144284155	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_272	MERS-CoV	NC_019843.3	-	1922	2240	318	20.38045731	327.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_273	MERS-CoV	NC_019843.3	-	1922	2281	359	3.762794711	60.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_274	MERS-CoV	NC_019843.3	-	1922	2311	389	1.168552094	20.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_275	MERS-CoV	NC_019843.3	-	1922	2315	393	1.298534393	21.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_276	MERS-CoV	NC_019843.3	-	1922	2373	451	2.947249171	52.0	NA	Calu-3
vc_MERS-CoV_277	MERS-CoV	NC_019843.3	-	1930	2152	222	1.307705742	21.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_278	MERS-CoV	NC_019843.3	-	1930	2240	310	0.416532733	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_279	MERS-CoV	NC_019843.3	-	1930	2373	443	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_280	MERS-CoV	NC_019843.3	-	1930	5112	3182	11.56228521	204.0	NA	Calu-3
vc_MERS-CoV_281	MERS-CoV	NC_019843.3	-	1930	29210	27280	29.41581384	519.0	NA	Calu-3
vc_MERS-CoV_282	MERS-CoV	NC_019843.3	+	1932	2250	318	75.23971476	1201.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_283	MERS-CoV	NC_019843.3	-	1946	2152	206	0.44572719	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_284	MERS-CoV	NC_019843.3	-	1951	2191	240	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_285	MERS-CoV	NC_019843.3	-	1951	2199	248	0.711078117	13.0	NA	Calu-3;Calu-3
vc_MERS-CoV_286	MERS-CoV	NC_019843.3	-	1951	2211	260	2.20663061	35.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_287	MERS-CoV	NC_019843.3	-	1951	2215	264	1.179454858	19.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_288	MERS-CoV	NC_019843.3	-	1951	2226	275	0.861965822	13.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_289	MERS-CoV	NC_019843.3	-	1951	2237	286	11.86864866	192.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_290	MERS-CoV	NC_019843.3	-	1951	2240	289	1.12218879	19.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_291	MERS-CoV	NC_019843.3	-	1951	2278	327	6.299674649	115.5	NA	Calu-3;Calu-3
vc_MERS-CoV_292	MERS-CoV	NC_019843.3	-	1951	2281	330	5.99918243	98.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_293	MERS-CoV	NC_019843.3	-	1951	2311	360	7.049222821	113.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_294	MERS-CoV	NC_019843.3	-	1951	2315	364	0.983744888	18.0	NA	Calu-3;Calu-3
vc_MERS-CoV_295	MERS-CoV	NC_019843.3	-	1951	2326	375	6.816782457	108.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_296	MERS-CoV	NC_019843.3	-	1951	2337	386	7.977017495	126.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_297	MERS-CoV	NC_019843.3	-	1951	2378	427	27.11735479	433.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_298	MERS-CoV	NC_019843.3	-	1951	2420	469	0.541044511	10.0	NA	Calu-3;Calu-3
vc_MERS-CoV_299	MERS-CoV	NC_019843.3	-	1951	2857	906	3.126110686	50.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_300	MERS-CoV	NC_019843.3	-	1951	28703	26752	19.73179104	316.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_301	MERS-CoV	NC_019843.3	-	1951	29148	27197	1.246913111	22.0	NA	Calu-3
vc_MERS-CoV_302	MERS-CoV	NC_019843.3	+	1960	2435	475	0.79609492	14.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_303	MERS-CoV	NC_019843.3	-	1967	2240	273	3.597056852	66.0	NA	Calu-3;Calu-3
vc_MERS-CoV_304	MERS-CoV	NC_019843.3	+	1975	2228	253	0.384174638	6.666666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_305	MERS-CoV	NC_019843.3	+	1975	2232	257	0.763466957	14.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_306	MERS-CoV	NC_019843.3	+	1975	2330	355	0.631806796	10.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_307	MERS-CoV	NC_019843.3	+	1975	2332	357	1.160552051	18.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_308	MERS-CoV	NC_019843.3	+	1975	2448	473	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_309	MERS-CoV	NC_019843.3	-	2005	25243	23238	4.760940968	84.0	NA	Calu-3
vc_MERS-CoV_310	MERS-CoV	NC_019843.3	+	2013	2228	215	1.234104666	20.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_311	MERS-CoV	NC_019843.3	+	2013	2250	237	2.331127112	37.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_312	MERS-CoV	NC_019843.3	+	2013	2284	271	0.736812293	13.0	orf1ab	Calu-3
vc_MERS-CoV_313	MERS-CoV	NC_019843.3	+	2013	2330	317	5.964414386	90.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_314	MERS-CoV	NC_019843.3	+	2013	2332	319	1.797456168	33.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_315	MERS-CoV	NC_019843.3	+	2013	2369	356	2.31883172	33.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_316	MERS-CoV	NC_019843.3	+	2013	27317	25304	8.161613088	144.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_317	MERS-CoV	NC_019843.3	-	2055	2373	318	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_318	MERS-CoV	NC_019843.3	-	2067	2240	173	3.071484187	56.5	NA	Calu-3;Calu-3
vc_MERS-CoV_319	MERS-CoV	NC_019843.3	+	2071	2332	261	3.457349989	61.0	orf1ab	Calu-3
vc_MERS-CoV_320	MERS-CoV	NC_019843.3	+	2111	8265	6154	12.80919832	226.0	orf1ab	Calu-3
vc_MERS-CoV_321	MERS-CoV	NC_019843.3	+	2143	2747	604	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_322	MERS-CoV	NC_019843.3	+	2146	2715	569	5.123990765	94.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_323	MERS-CoV	NC_019843.3	-	2153	2326	173	24.36002459	391.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_324	MERS-CoV	NC_019843.3	-	2153	2337	184	0.378450841	6.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_325	MERS-CoV	NC_019843.3	-	2153	2373	220	0.935645077	17.0	NA	Calu-3;Calu-3
vc_MERS-CoV_326	MERS-CoV	NC_019843.3	-	2153	2378	225	0.613205727	9.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_327	MERS-CoV	NC_019843.3	-	2153	2420	267	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_328	MERS-CoV	NC_019843.3	-	2153	2610	457	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_329	MERS-CoV	NC_019843.3	-	2153	2619	466	0.489530333	7.0	NA	Calu-3;Calu-3
vc_MERS-CoV_330	MERS-CoV	NC_019843.3	-	2153	3606	1453	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_331	MERS-CoV	NC_019843.3	-	2153	5953	3800	2.153759009	38.0	NA	Calu-3
vc_MERS-CoV_332	MERS-CoV	NC_019843.3	-	2153	9517	7364	11.33557373	200.0	NA	Calu-3
vc_MERS-CoV_333	MERS-CoV	NC_019843.3	-	2153	26855	24702	0.906845899	16.0	NA	Calu-3
vc_MERS-CoV_334	MERS-CoV	NC_019843.3	-	2153	29095	26942	7.646914825	112.0	NA	Calu-3;Calu-3
vc_MERS-CoV_335	MERS-CoV	NC_019843.3	-	2204	2619	415	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_336	MERS-CoV	NC_019843.3	-	2204	3381	1177	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_337	MERS-CoV	NC_019843.3	-	2204	25243	23039	4.25084015	75.0	NA	Calu-3
vc_MERS-CoV_338	MERS-CoV	NC_019843.3	-	2337	16890	14553	1.360268848	24.0	NA	Calu-3
vc_MERS-CoV_339	MERS-CoV	NC_019843.3	-	2339	25243	22904	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_340	MERS-CoV	NC_019843.3	-	2344	2619	275	1.123344821	16.0	NA	Calu-3;Calu-3
vc_MERS-CoV_341	MERS-CoV	NC_019843.3	-	2344	28687	26343	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_342	MERS-CoV	NC_019843.3	-	2380	2619	239	3.003927039	53.0	NA	Calu-3
vc_MERS-CoV_343	MERS-CoV	NC_019843.3	+	2551	2799	248	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_344	MERS-CoV	NC_019843.3	-	2559	2965	406	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_345	MERS-CoV	NC_019843.3	-	2608	2965	357	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_346	MERS-CoV	NC_019843.3	-	2608	3144	536	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_347	MERS-CoV	NC_019843.3	-	2663	2952	289	0.372732135	6.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_348	MERS-CoV	NC_019843.3	-	2663	2957	294	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_349	MERS-CoV	NC_019843.3	-	2663	2982	319	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_350	MERS-CoV	NC_019843.3	+	2716	2873	157	0.22587509	3.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_351	MERS-CoV	NC_019843.3	+	2716	2972	256	0.566778687	10.0	orf1ab	Calu-3
vc_MERS-CoV_352	MERS-CoV	NC_019843.3	+	2716	6028	3312	13.31929914	235.0	orf1ab	Calu-3
vc_MERS-CoV_353	MERS-CoV	NC_019843.3	+	2716	7782	5066	1.246913111	22.0	orf1ab	Calu-3
vc_MERS-CoV_354	MERS-CoV	NC_019843.3	-	2842	3348	506	4.080877037	65.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_355	MERS-CoV	NC_019843.3	-	2842	3381	539	0.97848265	15.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_356	MERS-CoV	NC_019843.3	-	2842	3441	599	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_357	MERS-CoV	NC_019843.3	-	2842	3447	605	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_358	MERS-CoV	NC_019843.3	-	2842	3564	722	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_359	MERS-CoV	NC_019843.3	-	2842	28727	25885	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_360	MERS-CoV	NC_019843.3	-	2878	3573	695	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_361	MERS-CoV	NC_019843.3	+	2883	15952	13069	1.757013929	31.0	orf1ab	Calu-3
vc_MERS-CoV_362	MERS-CoV	NC_019843.3	-	2966	3381	415	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_363	MERS-CoV	NC_019843.3	-	2966	3525	559	0.425412529	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_364	MERS-CoV	NC_019843.3	-	2966	3573	607	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_365	MERS-CoV	NC_019843.3	-	2966	28757	25791	3.740739332	66.0	NA	Calu-3
vc_MERS-CoV_366	MERS-CoV	NC_019843.3	+	2997	3610	613	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_367	MERS-CoV	NC_019843.3	-	3049	3381	332	0.320343296	5.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_368	MERS-CoV	NC_019843.3	+	3070	29169	26099	3.514184563	64.5	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_369	MERS-CoV	NC_019843.3	-	3084	3381	297	0.545333541	10.0	NA	Calu-3;Calu-3
vc_MERS-CoV_370	MERS-CoV	NC_019843.3	-	3146	3381	235	0.215565617	3.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_371	MERS-CoV	NC_019843.3	-	3165	3381	216	0.358120904	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_372	MERS-CoV	NC_019843.3	-	3382	3564	182	0.172623089	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_373	MERS-CoV	NC_019843.3	-	3382	3606	224	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_374	MERS-CoV	NC_019843.3	-	3382	4014	632	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_375	MERS-CoV	NC_019843.3	+	3402	6243	2841	1.115321778	18.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_376	MERS-CoV	NC_019843.3	-	3463	4217	754	0.135261128	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_377	MERS-CoV	NC_019843.3	+	3510	20012	16502	5.044330312	89.0	orf1ab	Calu-3
vc_MERS-CoV_378	MERS-CoV	NC_019843.3	+	3520	3965	445	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_379	MERS-CoV	NC_019843.3	+	3520	29273	25753	0.113355737	2.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_380	MERS-CoV	NC_019843.3	-	3526	3959	433	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_381	MERS-CoV	NC_019843.3	-	3526	4088	562	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_382	MERS-CoV	NC_019843.3	-	3526	4299	773	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_383	MERS-CoV	NC_019843.3	-	3545	28088	24543	0.144284155	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_384	MERS-CoV	NC_019843.3	-	3550	29709	26159	0.680134424	12.0	NA	Calu-3
vc_MERS-CoV_385	MERS-CoV	NC_019843.3	-	3574	3806	232	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_386	MERS-CoV	NC_019843.3	-	3574	3942	368	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_387	MERS-CoV	NC_019843.3	-	3574	4176	602	0.682739183	12.5	NA	Calu-3;Calu-3
vc_MERS-CoV_388	MERS-CoV	NC_019843.3	-	3574	20411	16837	0.906845899	16.0	NA	Calu-3
vc_MERS-CoV_389	MERS-CoV	NC_019843.3	-	3574	28668	25094	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_390	MERS-CoV	NC_019843.3	-	3574	29545	25971	4.194162282	74.0	NA	Calu-3
vc_MERS-CoV_391	MERS-CoV	NC_019843.3	+	3581	3977	396	0.591157105	9.666666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_392	MERS-CoV	NC_019843.3	+	3630	4097	467	3.056012341	56.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_393	MERS-CoV	NC_019843.3	+	3630	4636	1006	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_394	MERS-CoV	NC_019843.3	-	3826	29210	25384	3.514027858	62.0	NA	Calu-3
vc_MERS-CoV_395	MERS-CoV	NC_019843.3	-	4244	4778	534	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_396	MERS-CoV	NC_019843.3	+	4248	6426	2178	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_397	MERS-CoV	NC_019843.3	+	4332	18247	13915	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_398	MERS-CoV	NC_019843.3	-	4428	5112	684	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_399	MERS-CoV	NC_019843.3	+	4459	4689	230	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_400	MERS-CoV	NC_019843.3	-	4536	5112	576	3.352729016	61.5	NA	Calu-3;Calu-3
vc_MERS-CoV_401	MERS-CoV	NC_019843.3	-	4582	4886	304	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_402	MERS-CoV	NC_019843.3	-	4661	5112	451	1.326416858	24.5	NA	Calu-3;Calu-3
vc_MERS-CoV_403	MERS-CoV	NC_019843.3	-	4711	5112	401	0.218133417	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_404	MERS-CoV	NC_019843.3	+	4791	5021	230	0.946827894	17.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_405	MERS-CoV	NC_019843.3	-	4807	4969	162	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_406	MERS-CoV	NC_019843.3	-	4807	5057	250	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_407	MERS-CoV	NC_019843.3	-	4867	5057	190	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_408	MERS-CoV	NC_019843.3	-	4878	5057	179	1.247283676	21.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_409	MERS-CoV	NC_019843.3	-	4916	5057	141	0.412216927	7.5	NA	Calu-3;Calu-3
vc_MERS-CoV_410	MERS-CoV	NC_019843.3	-	5113	5953	840	1.967489774	36.0	NA	Calu-3;Calu-3
vc_MERS-CoV_411	MERS-CoV	NC_019843.3	-	5198	5953	755	0.545333541	10.0	NA	Calu-3;Calu-3
vc_MERS-CoV_412	MERS-CoV	NC_019843.3	-	5198	6846	1648	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_413	MERS-CoV	NC_019843.3	-	5349	5953	604	1.000833009	15.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_414	MERS-CoV	NC_019843.3	-	5416	5953	537	0.912968354	12.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_415	MERS-CoV	NC_019843.3	-	5416	5958	542	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_416	MERS-CoV	NC_019843.3	-	5489	5916	427	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_417	MERS-CoV	NC_019843.3	-	5489	5953	464	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_418	MERS-CoV	NC_019843.3	-	5492	5900	408	0.559082928	8.5	NA	Calu-3;Calu-3
vc_MERS-CoV_419	MERS-CoV	NC_019843.3	-	5492	5931	439	0.322911095	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_420	MERS-CoV	NC_019843.3	-	5492	5947	455	2.753383642	44.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_421	MERS-CoV	NC_019843.3	-	5492	5950	458	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_422	MERS-CoV	NC_019843.3	-	5492	5953	461	1.710514634	25.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_423	MERS-CoV	NC_019843.3	-	5492	5958	466	0.537926789	7.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_424	MERS-CoV	NC_019843.3	-	5492	6156	664	2.89199246	44.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_425	MERS-CoV	NC_019843.3	-	5543	5900	357	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_426	MERS-CoV	NC_019843.3	-	5543	5953	410	5.629606293	91.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_427	MERS-CoV	NC_019843.3	+	5595	6203	608	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_428	MERS-CoV	NC_019843.3	+	5615	21224	15609	58.37820473	1030.0	orf1ab	Calu-3
vc_MERS-CoV_429	MERS-CoV	NC_019843.3	+	5619	6762	1143	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_430	MERS-CoV	NC_019843.3	-	5621	5953	332	8.543911622	109.0	NA	Calu-3;Calu-3
vc_MERS-CoV_431	MERS-CoV	NC_019843.3	-	5628	5953	325	1.519527161	25.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_432	MERS-CoV	NC_019843.3	+	5640	5919	279	0.332371453	4.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_433	MERS-CoV	NC_019843.3	+	5640	5980	340	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_434	MERS-CoV	NC_019843.3	+	5640	6021	381	0.187649967	3.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_435	MERS-CoV	NC_019843.3	+	5640	6028	388	1.385595847	21.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_436	MERS-CoV	NC_019843.3	-	5653	5953	300	4.874296706	86.0	NA	Calu-3
vc_MERS-CoV_437	MERS-CoV	NC_019843.3	-	5653	5958	305	18.64701879	329.0	NA	Calu-3
vc_MERS-CoV_438	MERS-CoV	NC_019843.3	-	5695	5958	263	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_439	MERS-CoV	NC_019843.3	-	5723	5953	230	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_440	MERS-CoV	NC_019843.3	+	5727	14331	8604	5.55443113	98.0	orf1ab	Calu-3
vc_MERS-CoV_441	MERS-CoV	NC_019843.3	+	5727	18620	12893	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_442	MERS-CoV	NC_019843.3	-	5739	5931	192	0.246472351	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_443	MERS-CoV	NC_019843.3	-	5739	5953	214	0.483520074	7.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_444	MERS-CoV	NC_019843.3	-	5772	5953	181	49.28799424	704.0	NA	Calu-3;Calu-3
vc_MERS-CoV_445	MERS-CoV	NC_019843.3	-	5772	6156	384	4.55604687	73.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_446	MERS-CoV	NC_019843.3	-	5772	8601	2829	1.190235242	21.0	NA	Calu-3
vc_MERS-CoV_447	MERS-CoV	NC_019843.3	-	5777	5953	176	2.274929023	41.5	NA	Calu-3;Calu-3
vc_MERS-CoV_448	MERS-CoV	NC_019843.3	-	5777	5958	181	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_449	MERS-CoV	NC_019843.3	-	5777	6156	379	0.660833793	12.0	NA	Calu-3;Calu-3
vc_MERS-CoV_450	MERS-CoV	NC_019843.3	-	5777	29703	23926	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_451	MERS-CoV	NC_019843.3	-	5785	5958	173	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_452	MERS-CoV	NC_019843.3	-	5866	6156	290	5.91901608	96.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_453	MERS-CoV	NC_019843.3	-	5901	6156	255	2.058333704	31.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_454	MERS-CoV	NC_019843.3	-	5901	6373	472	3.895918042	71.5	NA	Calu-3;Calu-3
vc_MERS-CoV_455	MERS-CoV	NC_019843.3	-	5901	6401	500	4.685119174	85.5	NA	Calu-3;Calu-3
vc_MERS-CoV_456	MERS-CoV	NC_019843.3	-	5901	6843	942	2.796672903	51.5	NA	Calu-3;Calu-3
vc_MERS-CoV_457	MERS-CoV	NC_019843.3	-	5901	6856	955	3.563228037	52.5	NA	Calu-3;Calu-3
vc_MERS-CoV_458	MERS-CoV	NC_019843.3	-	5901	6974	1073	4.131667819	76.0	NA	Calu-3;Calu-3
vc_MERS-CoV_459	MERS-CoV	NC_019843.3	-	5901	12744	6843	13.71604422	242.0	NA	Calu-3
vc_MERS-CoV_460	MERS-CoV	NC_019843.3	-	5901	15372	9471	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_461	MERS-CoV	NC_019843.3	-	5901	28203	22302	62.24844784	1143.5	NA	Calu-3;Calu-3
vc_MERS-CoV_462	MERS-CoV	NC_019843.3	-	6077	6947	870	0.680134424	12.0	NA	Calu-3
vc_MERS-CoV_463	MERS-CoV	NC_019843.3	-	6077	25243	19166	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_464	MERS-CoV	NC_019843.3	+	6104	6421	317	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_465	MERS-CoV	NC_019843.3	+	6104	6579	475	0.220277931	4.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_466	MERS-CoV	NC_019843.3	+	6127	6546	419	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_467	MERS-CoV	NC_019843.3	-	6157	6373	216	0.298586228	4.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_468	MERS-CoV	NC_019843.3	-	6157	6393	236	0.274811285	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_469	MERS-CoV	NC_019843.3	-	6157	6396	239	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_470	MERS-CoV	NC_019843.3	-	6157	6401	244	0.819599994	13.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_471	MERS-CoV	NC_019843.3	-	6157	6456	299	12.65563219	203.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_472	MERS-CoV	NC_019843.3	-	6157	6479	322	1.207513738	18.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_473	MERS-CoV	NC_019843.3	-	6157	6522	365	8.625975491	126.0	NA	Calu-3;Calu-3
vc_MERS-CoV_474	MERS-CoV	NC_019843.3	-	6157	6537	380	0.167470899	2.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_475	MERS-CoV	NC_019843.3	-	6157	6540	383	0.220277931	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_476	MERS-CoV	NC_019843.3	-	6157	6575	418	0.44572719	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_477	MERS-CoV	NC_019843.3	-	6157	6585	428	0.172623089	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_478	MERS-CoV	NC_019843.3	-	6157	6645	488	0.628205829	11.5	NA	Calu-3;Calu-3
vc_MERS-CoV_479	MERS-CoV	NC_019843.3	-	6157	6649	492	1.569072011	22.5	NA	Calu-3;Calu-3
vc_MERS-CoV_480	MERS-CoV	NC_019843.3	-	6157	6750	593	0.723998757	11.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_481	MERS-CoV	NC_019843.3	-	6157	6843	686	0.906845899	16.0	NA	Calu-3
vc_MERS-CoV_482	MERS-CoV	NC_019843.3	-	6157	6856	699	0.702500059	13.0	NA	Calu-3;Calu-3
vc_MERS-CoV_483	MERS-CoV	NC_019843.3	-	6157	6865	708	1.743131098	28.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_484	MERS-CoV	NC_019843.3	-	6157	6877	720	0.547478055	10.0	NA	Calu-3;Calu-3
vc_MERS-CoV_485	MERS-CoV	NC_019843.3	-	6157	6925	768	2.076341481	33.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_486	MERS-CoV	NC_019843.3	-	6157	6947	790	0.386459838	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_487	MERS-CoV	NC_019843.3	-	6157	6955	798	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_488	MERS-CoV	NC_019843.3	-	6157	6974	817	2.45681529	39.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_489	MERS-CoV	NC_019843.3	-	6157	6978	821	1.078674654	18.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_490	MERS-CoV	NC_019843.3	-	6157	7051	894	0.349105515	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_491	MERS-CoV	NC_019843.3	-	6157	7788	1631	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_492	MERS-CoV	NC_019843.3	-	6157	7803	1646	0.963523767	17.0	NA	Calu-3
vc_MERS-CoV_493	MERS-CoV	NC_019843.3	-	6157	9971	3814	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_494	MERS-CoV	NC_019843.3	-	6157	22948	16791	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_495	MERS-CoV	NC_019843.3	-	6178	6649	471	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_496	MERS-CoV	NC_019843.3	-	6187	6645	458	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_497	MERS-CoV	NC_019843.3	+	6199	6690	491	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_498	MERS-CoV	NC_019843.3	+	6208	6579	371	0.189794482	3.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_499	MERS-CoV	NC_019843.3	-	6256	6401	145	0.650990972	10.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_500	MERS-CoV	NC_019843.3	-	6256	6456	200	8.577084947	137.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_501	MERS-CoV	NC_019843.3	-	6256	6479	223	2.949090147	54.0	NA	Calu-3;Calu-3
vc_MERS-CoV_502	MERS-CoV	NC_019843.3	-	6256	6489	233	0.587421862	9.0	NA	Calu-3;Calu-3
vc_MERS-CoV_503	MERS-CoV	NC_019843.3	-	6256	6522	266	6.042627738	100.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_504	MERS-CoV	NC_019843.3	-	6256	6540	284	1.133557373	20.0	NA	Calu-3
vc_MERS-CoV_505	MERS-CoV	NC_019843.3	-	6256	6649	393	1.551018319	23.0	NA	Calu-3;Calu-3
vc_MERS-CoV_506	MERS-CoV	NC_019843.3	-	6256	6693	437	0.573672475	10.5	NA	Calu-3;Calu-3
vc_MERS-CoV_507	MERS-CoV	NC_019843.3	-	6256	6843	587	1.219494665	22.5	NA	Calu-3;Calu-3
vc_MERS-CoV_508	MERS-CoV	NC_019843.3	-	6256	20494	14238	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_509	MERS-CoV	NC_019843.3	-	6256	27597	21341	2.947249171	52.0	NA	Calu-3
vc_MERS-CoV_510	MERS-CoV	NC_019843.3	+	6278	6426	148	1.087846004	17.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_511	MERS-CoV	NC_019843.3	+	6278	7342	1064	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_512	MERS-CoV	NC_019843.3	+	6328	6546	218	0.340067212	6.0	orf1ab	Calu-3
vc_MERS-CoV_513	MERS-CoV	NC_019843.3	-	6341	6947	606	2.833893433	50.0	NA	Calu-3
vc_MERS-CoV_514	MERS-CoV	NC_019843.3	+	6352	6546	194	0.270522256	5.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_515	MERS-CoV	NC_019843.3	-	6391	6865	474	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_516	MERS-CoV	NC_019843.3	-	6391	27845	21454	2.267114747	40.0	NA	Calu-3
vc_MERS-CoV_517	MERS-CoV	NC_019843.3	+	6427	6680	253	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_518	MERS-CoV	NC_019843.3	+	6427	6720	293	0.353394544	6.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_519	MERS-CoV	NC_019843.3	+	6427	6838	411	0.623456555	11.0	orf1ab	Calu-3
vc_MERS-CoV_520	MERS-CoV	NC_019843.3	+	6427	6850	423	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_521	MERS-CoV	NC_019843.3	+	6427	6875	448	0.824433855	15.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_522	MERS-CoV	NC_019843.3	+	6427	7121	694	6.80134424	120.0	orf1ab	Calu-3
vc_MERS-CoV_523	MERS-CoV	NC_019843.3	+	6427	23682	17255	0.113355737	2.0	orf1ab;S	Calu-3
vc_MERS-CoV_524	MERS-CoV	NC_019843.3	-	6530	18059	11529	1.983725403	35.0	NA	Calu-3
vc_MERS-CoV_525	MERS-CoV	NC_019843.3	+	6547	6720	173	2.024167643	37.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_526	MERS-CoV	NC_019843.3	+	6580	6838	258	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_527	MERS-CoV	NC_019843.3	-	6602	6846	244	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_528	MERS-CoV	NC_019843.3	-	6651	7000	349	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_529	MERS-CoV	NC_019843.3	+	6681	6838	157	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_530	MERS-CoV	NC_019843.3	+	6681	6895	214	0.160317425	2.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_531	MERS-CoV	NC_019843.3	+	6681	6922	241	0.163600062	3.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_532	MERS-CoV	NC_019843.3	+	6681	6935	254	0.610637928	9.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_533	MERS-CoV	NC_019843.3	+	6681	7121	440	0.27266677	5.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_534	MERS-CoV	NC_019843.3	+	6681	7333	652	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_535	MERS-CoV	NC_019843.3	+	6681	7392	711	0.781083318	14.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_536	MERS-CoV	NC_019843.3	+	6681	7445	764	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_537	MERS-CoV	NC_019843.3	+	6681	7910	1229	14.05611143	248.0	orf1ab	Calu-3
vc_MERS-CoV_538	MERS-CoV	NC_019843.3	+	6681	17224	10543	2.55050409	45.0	orf1ab	Calu-3
vc_MERS-CoV_539	MERS-CoV	NC_019843.3	+	6681	22960	16279	0.283389343	5.0	orf1ab;S	Calu-3
vc_MERS-CoV_540	MERS-CoV	NC_019843.3	+	6721	6972	251	0.27266677	5.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_541	MERS-CoV	NC_019843.3	+	6721	7041	320	1.870369666	33.0	orf1ab	Calu-3
vc_MERS-CoV_542	MERS-CoV	NC_019843.3	+	6721	7048	327	0.148578276	2.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_543	MERS-CoV	NC_019843.3	+	6721	7097	376	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_544	MERS-CoV	NC_019843.3	+	6721	7121	400	0.880868629	14.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_545	MERS-CoV	NC_019843.3	+	6721	7325	604	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_546	MERS-CoV	NC_019843.3	+	6721	7479	758	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_547	MERS-CoV	NC_019843.3	+	6721	7782	1061	0.340067212	6.0	orf1ab	Calu-3
vc_MERS-CoV_548	MERS-CoV	NC_019843.3	+	6721	7947	1226	1.416946717	25.0	orf1ab	Calu-3
vc_MERS-CoV_549	MERS-CoV	NC_019843.3	+	6721	29540	22819	0.340067212	6.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_550	MERS-CoV	NC_019843.3	-	6814	7011	197	0.519139121	9.5	NA	Calu-3;Calu-3
vc_MERS-CoV_551	MERS-CoV	NC_019843.3	+	6876	7250	374	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_552	MERS-CoV	NC_019843.3	+	6876	7342	466	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_553	MERS-CoV	NC_019843.3	+	6904	7121	217	1.70033606	30.0	orf1ab	Calu-3
vc_MERS-CoV_554	MERS-CoV	NC_019843.3	+	6913	7121	208	1.350081755	21.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_555	MERS-CoV	NC_019843.3	+	6913	7294	381	0.680134424	12.0	orf1ab	Calu-3
vc_MERS-CoV_556	MERS-CoV	NC_019843.3	+	6913	7483	570	0.623456555	11.0	orf1ab	Calu-3
vc_MERS-CoV_557	MERS-CoV	NC_019843.3	+	6913	7920	1007	6.121209816	108.0	orf1ab	Calu-3
vc_MERS-CoV_558	MERS-CoV	NC_019843.3	+	6913	7966	1053	17.45678355	308.0	orf1ab	Calu-3
vc_MERS-CoV_559	MERS-CoV	NC_019843.3	-	6930	7803	873	0.85016803	15.0	NA	Calu-3
vc_MERS-CoV_560	MERS-CoV	NC_019843.3	-	6948	7109	161	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_561	MERS-CoV	NC_019843.3	-	6948	7291	343	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_562	MERS-CoV	NC_019843.3	-	7012	7195	183	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_563	MERS-CoV	NC_019843.3	-	7012	7239	227	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_564	MERS-CoV	NC_019843.3	-	7012	7720	708	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_565	MERS-CoV	NC_019843.3	-	7012	7788	776	0.929211533	17.0	NA	Calu-3;Calu-3
vc_MERS-CoV_566	MERS-CoV	NC_019843.3	-	7016	7291	275	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_567	MERS-CoV	NC_019843.3	-	7016	7754	738	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_568	MERS-CoV	NC_019843.3	-	7016	7822	806	1.457388956	27.0	NA	Calu-3;Calu-3
vc_MERS-CoV_569	MERS-CoV	NC_019843.3	-	7173	7803	630	0.270522256	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_570	MERS-CoV	NC_019843.3	+	7213	17692	10479	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_571	MERS-CoV	NC_019843.3	-	7217	7455	238	0.161455548	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_572	MERS-CoV	NC_019843.3	-	7237	7720	483	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_573	MERS-CoV	NC_019843.3	-	7269	7803	534	0.420821762	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_574	MERS-CoV	NC_019843.3	-	7366	7803	437	1.249004906	20.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_575	MERS-CoV	NC_019843.3	-	7366	17057	9691	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_576	MERS-CoV	NC_019843.3	+	7371	7782	411	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_577	MERS-CoV	NC_019843.3	-	7406	7803	397	0.563384686	9.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_578	MERS-CoV	NC_019843.3	-	7406	7944	538	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_579	MERS-CoV	NC_019843.3	-	7442	7754	312	0.135261128	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_580	MERS-CoV	NC_019843.3	-	7442	7803	361	0.32505561	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_581	MERS-CoV	NC_019843.3	+	7453	7979	526	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_582	MERS-CoV	NC_019843.3	-	7556	7822	266	2.890571302	51.0	NA	Calu-3
vc_MERS-CoV_583	MERS-CoV	NC_019843.3	+	7561	7891	330	2.702702075	39.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_584	MERS-CoV	NC_019843.3	+	7561	7947	386	0.793490161	14.0	orf1ab	Calu-3
vc_MERS-CoV_585	MERS-CoV	NC_019843.3	+	7561	7999	438	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_586	MERS-CoV	NC_019843.3	-	7574	7754	180	0.380177163	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_587	MERS-CoV	NC_019843.3	-	7574	7788	214	0.476655608	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_588	MERS-CoV	NC_019843.3	-	7574	7791	217	0.188087298	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_589	MERS-CoV	NC_019843.3	-	7574	7803	229	2.125579414	35.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_590	MERS-CoV	NC_019843.3	-	7574	7813	239	1.030288382	18.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_591	MERS-CoV	NC_019843.3	-	7574	7828	254	0.296716676	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_592	MERS-CoV	NC_019843.3	-	7574	7904	330	1.096429155	17.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_593	MERS-CoV	NC_019843.3	-	7574	7997	423	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_594	MERS-CoV	NC_019843.3	+	7588	7891	303	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_595	MERS-CoV	NC_019843.3	+	7588	8121	533	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_596	MERS-CoV	NC_019843.3	-	7602	7791	189	0.202396792	3.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_597	MERS-CoV	NC_019843.3	-	7602	7881	279	1.303590979	23.0	NA	Calu-3
vc_MERS-CoV_598	MERS-CoV	NC_019843.3	-	7602	7904	302	0.301443035	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_599	MERS-CoV	NC_019843.3	-	7602	8319	717	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_600	MERS-CoV	NC_019843.3	-	7610	7803	193	0.816740641	13.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_601	MERS-CoV	NC_019843.3	-	7618	7803	185	0.135261128	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_602	MERS-CoV	NC_019843.3	+	7643	7861	218	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_603	MERS-CoV	NC_019843.3	-	7682	7888	206	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_604	MERS-CoV	NC_019843.3	-	7682	7944	262	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_605	MERS-CoV	NC_019843.3	+	7706	7925	219	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_606	MERS-CoV	NC_019843.3	-	7710	7888	178	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_607	MERS-CoV	NC_019843.3	-	7725	8601	876	8.331646694	147.0	NA	Calu-3
vc_MERS-CoV_608	MERS-CoV	NC_019843.3	-	7751	12094	4343	1.076879505	19.0	NA	Calu-3
vc_MERS-CoV_609	MERS-CoV	NC_019843.3	+	7759	8265	506	1.190235242	21.0	orf1ab	Calu-3
vc_MERS-CoV_610	MERS-CoV	NC_019843.3	+	7779	7938	159	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_611	MERS-CoV	NC_019843.3	+	7779	7947	168	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_612	MERS-CoV	NC_019843.3	+	7779	7979	200	0.680134424	12.0	orf1ab	Calu-3
vc_MERS-CoV_613	MERS-CoV	NC_019843.3	+	7779	7991	212	0.731147139	11.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_614	MERS-CoV	NC_019843.3	+	7779	8081	302	0.246472351	4.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_615	MERS-CoV	NC_019843.3	-	7804	7993	189	0.44687295	7.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_616	MERS-CoV	NC_019843.3	-	7804	7997	193	0.9318227	15.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_617	MERS-CoV	NC_019843.3	-	7804	8083	279	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_618	MERS-CoV	NC_019843.3	-	7804	13875	6071	1.020201636	18.0	NA	Calu-3
vc_MERS-CoV_619	MERS-CoV	NC_019843.3	-	7804	16908	9104	0.793490161	14.0	NA	Calu-3
vc_MERS-CoV_620	MERS-CoV	NC_019843.3	-	8093	8319	226	0.510995847	8.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_621	MERS-CoV	NC_019843.3	-	8103	8319	216	2.040403272	36.0	NA	Calu-3
vc_MERS-CoV_622	MERS-CoV	NC_019843.3	-	8110	8250	140	3.785976363	60.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_623	MERS-CoV	NC_019843.3	-	8110	8270	160	0.372727043	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_624	MERS-CoV	NC_019843.3	-	8110	8308	198	1.444836423	22.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_625	MERS-CoV	NC_019843.3	-	8110	8319	209	12.38364707	201.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_626	MERS-CoV	NC_019843.3	-	8110	8362	252	3.491985993	56.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_627	MERS-CoV	NC_019843.3	-	8110	8458	348	3.489963025	57.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_628	MERS-CoV	NC_019843.3	-	8110	8570	460	2.175988654	34.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_629	MERS-CoV	NC_019843.3	-	8110	8610	500	1.36762288	25.0	NA	Calu-3;Calu-3
vc_MERS-CoV_630	MERS-CoV	NC_019843.3	-	8110	8644	534	5.236843412	84.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_631	MERS-CoV	NC_019843.3	-	8110	8660	550	0.187649967	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_632	MERS-CoV	NC_019843.3	-	8110	8938	828	0.435425356	7.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_633	MERS-CoV	NC_019843.3	-	8110	9974	1864	2.962642355	49.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_634	MERS-CoV	NC_019843.3	-	8110	14856	6746	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_635	MERS-CoV	NC_019843.3	-	8110	17306	9196	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_636	MERS-CoV	NC_019843.3	-	8110	25608	17498	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_637	MERS-CoV	NC_019843.3	-	8110	28770	20660	3.287316383	58.0	NA	Calu-3
vc_MERS-CoV_638	MERS-CoV	NC_019843.3	+	8122	8325	203	0.301005705	5.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_639	MERS-CoV	NC_019843.3	-	8144	8458	314	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_640	MERS-CoV	NC_019843.3	-	8160	8458	298	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_641	MERS-CoV	NC_019843.3	-	8187	8458	271	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_642	MERS-CoV	NC_019843.3	-	8198	8601	403	1.249978114	23.0	NA	Calu-3;Calu-3
vc_MERS-CoV_643	MERS-CoV	NC_019843.3	-	8239	8969	730	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_644	MERS-CoV	NC_019843.3	-	8534	9364	830	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_645	MERS-CoV	NC_019843.3	-	8602	9364	762	3.134990482	50.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_646	MERS-CoV	NC_019843.3	-	8602	9517	915	1.457713695	23.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_647	MERS-CoV	NC_019843.3	-	8602	26517	17915	26.18517533	462.0	NA	Calu-3
vc_MERS-CoV_648	MERS-CoV	NC_019843.3	-	8620	8914	294	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_649	MERS-CoV	NC_019843.3	-	8620	9123	503	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_650	MERS-CoV	NC_019843.3	-	8620	9164	544	1.459073227	26.5	NA	Calu-3;Calu-3
vc_MERS-CoV_651	MERS-CoV	NC_019843.3	-	8620	9178	558	1.269278745	23.0	NA	Calu-3;Calu-3
vc_MERS-CoV_652	MERS-CoV	NC_019843.3	-	8620	9360	740	3.529710137	53.0	NA	Calu-3;Calu-3
vc_MERS-CoV_653	MERS-CoV	NC_019843.3	-	8620	22977	14357	4.420873756	78.0	NA	Calu-3
vc_MERS-CoV_654	MERS-CoV	NC_019843.3	-	8721	8938	217	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_655	MERS-CoV	NC_019843.3	-	8732	8938	206	0.196672994	3.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_656	MERS-CoV	NC_019843.3	-	8769	9652	883	11.95903029	211.0	NA	Calu-3
vc_MERS-CoV_657	MERS-CoV	NC_019843.3	-	8792	8938	146	0.629530551	9.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_658	MERS-CoV	NC_019843.3	-	8839	9164	325	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_659	MERS-CoV	NC_019843.3	-	8839	9178	339	0.735128023	13.5	NA	Calu-3;Calu-3
vc_MERS-CoV_660	MERS-CoV	NC_019843.3	-	8839	9517	678	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_661	MERS-CoV	NC_019843.3	-	8843	9364	521	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_662	MERS-CoV	NC_019843.3	-	8903	9364	461	1.13308137	18.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_663	MERS-CoV	NC_019843.3	-	8919	9364	445	0.665122822	12.0	NA	Calu-3;Calu-3
vc_MERS-CoV_664	MERS-CoV	NC_019843.3	-	8938	9171	233	0.135261128	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_665	MERS-CoV	NC_019843.3	-	8938	9364	426	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_666	MERS-CoV	NC_019843.3	-	8987	9364	377	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_667	MERS-CoV	NC_019843.3	+	9004	9184	180	1.076879505	19.0	orf1ab	Calu-3
vc_MERS-CoV_668	MERS-CoV	NC_019843.3	-	9024	9517	493	0.218133417	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_669	MERS-CoV	NC_019843.3	-	9038	9364	326	0.958160351	15.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_670	MERS-CoV	NC_019843.3	-	9038	9517	479	0.411947057	7.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_671	MERS-CoV	NC_019843.3	-	9063	9364	301	17.62363384	279.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_672	MERS-CoV	NC_019843.3	-	9063	9517	454	1.673522406	28.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_673	MERS-CoV	NC_019843.3	-	9090	9364	274	3.840360077	64.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_674	MERS-CoV	NC_019843.3	-	9090	9517	427	2.851309585	46.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_675	MERS-CoV	NC_019843.3	-	9108	9364	256	3.287316383	58.0	NA	Calu-3
vc_MERS-CoV_676	MERS-CoV	NC_019843.3	-	9146	9364	218	0.269384133	4.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_677	MERS-CoV	NC_019843.3	-	9158	9364	206	1.523266268	24.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_678	MERS-CoV	NC_019843.3	-	9158	9517	359	1.868517537	29.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_679	MERS-CoV	NC_019843.3	-	9227	9364	137	0.98421154	16.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_680	MERS-CoV	NC_019843.3	-	9227	9517	290	2.498884473	39.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_681	MERS-CoV	NC_019843.3	-	9230	9517	287	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_682	MERS-CoV	NC_019843.3	-	9347	9517	170	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_683	MERS-CoV	NC_019843.3	-	9362	9652	290	7.99337287	127.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_684	MERS-CoV	NC_019843.3	-	9365	9505	140	0.216426232	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_685	MERS-CoV	NC_019843.3	-	9365	9517	152	0.387622191	5.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_686	MERS-CoV	NC_019843.3	-	9518	9702	184	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_687	MERS-CoV	NC_019843.3	-	9518	10005	487	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_688	MERS-CoV	NC_019843.3	-	9541	9882	341	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_689	MERS-CoV	NC_019843.3	-	9541	9991	450	0.222422446	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_690	MERS-CoV	NC_019843.3	-	9541	11131	1590	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_691	MERS-CoV	NC_019843.3	-	9546	10003	457	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_692	MERS-CoV	NC_019843.3	+	9765	11772	2007	0.226711475	4.0	orf1ab	Calu-3
vc_MERS-CoV_693	MERS-CoV	NC_019843.3	-	9801	9974	173	0.218721616	3.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_694	MERS-CoV	NC_019843.3	-	9867	10003	136	0.412216927	7.5	NA	Calu-3;Calu-3
vc_MERS-CoV_695	MERS-CoV	NC_019843.3	-	9981	12094	2113	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_696	MERS-CoV	NC_019843.3	-	10004	10203	199	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_697	MERS-CoV	NC_019843.3	-	10004	10249	245	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_698	MERS-CoV	NC_019843.3	-	10004	11078	1074	0.401924047	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_699	MERS-CoV	NC_019843.3	+	10077	10506	429	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_700	MERS-CoV	NC_019843.3	+	10077	11102	1025	1.867925563	27.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_701	MERS-CoV	NC_019843.3	+	10077	11110	1033	9.72931731	158.3333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_702	MERS-CoV	NC_019843.3	+	10077	11114	1037	2.277533782	42.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_703	MERS-CoV	NC_019843.3	+	10077	11149	1072	6.640662349	122.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_704	MERS-CoV	NC_019843.3	-	10082	10308	226	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_705	MERS-CoV	NC_019843.3	-	10138	11736	1598	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_706	MERS-CoV	NC_019843.3	-	10351	24987	14636	1.020201636	18.0	NA	Calu-3
vc_MERS-CoV_707	MERS-CoV	NC_019843.3	-	10602	11352	750	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_708	MERS-CoV	NC_019843.3	-	10693	11044	351	2.988151655	54.5	NA	Calu-3;Calu-3
vc_MERS-CoV_709	MERS-CoV	NC_019843.3	-	10693	11055	362	3.279838694	47.5	NA	Calu-3;Calu-3
vc_MERS-CoV_710	MERS-CoV	NC_019843.3	-	10693	11091	398	3.754756391	61.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_711	MERS-CoV	NC_019843.3	-	10693	11098	405	1.190235242	21.0	NA	Calu-3
vc_MERS-CoV_712	MERS-CoV	NC_019843.3	-	10776	11146	370	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_713	MERS-CoV	NC_019843.3	-	10793	11146	353	1.151633979	21.0	NA	Calu-3;Calu-3
vc_MERS-CoV_714	MERS-CoV	NC_019843.3	+	10795	11110	315	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_715	MERS-CoV	NC_019843.3	-	10831	11098	267	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_716	MERS-CoV	NC_019843.3	-	10831	11352	521	0.963523767	17.0	NA	Calu-3
vc_MERS-CoV_717	MERS-CoV	NC_019843.3	+	10857	11114	257	0.476069954	7.666666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_718	MERS-CoV	NC_019843.3	-	10897	11041	144	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_719	MERS-CoV	NC_019843.3	-	10897	11091	194	0.163600062	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_720	MERS-CoV	NC_019843.3	-	10897	11154	257	1.870369666	33.0	NA	Calu-3
vc_MERS-CoV_721	MERS-CoV	NC_019843.3	-	10897	11479	582	2.380470484	42.0	NA	Calu-3
vc_MERS-CoV_722	MERS-CoV	NC_019843.3	-	11000	11141	141	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_723	MERS-CoV	NC_019843.3	-	11000	11348	348	1.303590979	23.0	NA	Calu-3
vc_MERS-CoV_724	MERS-CoV	NC_019843.3	-	11017	12094	1077	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_725	MERS-CoV	NC_019843.3	-	11033	11453	420	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_726	MERS-CoV	NC_019843.3	-	11057	11352	295	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_727	MERS-CoV	NC_019843.3	-	11122	11352	230	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_728	MERS-CoV	NC_019843.3	-	11124	11352	228	2.437148353	43.0	NA	Calu-3
vc_MERS-CoV_729	MERS-CoV	NC_019843.3	-	11124	11521	397	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_730	MERS-CoV	NC_019843.3	-	11128	11352	224	0.242183321	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_731	MERS-CoV	NC_019843.3	-	11128	11435	307	1.133557373	20.0	NA	Calu-3
vc_MERS-CoV_732	MERS-CoV	NC_019843.3	-	11128	11521	393	1.020201636	18.0	NA	Calu-3
vc_MERS-CoV_733	MERS-CoV	NC_019843.3	-	11130	11352	222	1.265334822	20.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_734	MERS-CoV	NC_019843.3	-	11130	11479	349	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_735	MERS-CoV	NC_019843.3	-	11132	11306	174	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_736	MERS-CoV	NC_019843.3	-	11132	11356	224	6.519285892	106.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_737	MERS-CoV	NC_019843.3	-	11132	11435	303	2.091533274	32.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_738	MERS-CoV	NC_019843.3	-	11132	11457	325	0.373585113	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_739	MERS-CoV	NC_019843.3	-	11132	11479	347	7.76577655	125.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_740	MERS-CoV	NC_019843.3	-	11132	11487	355	3.618501998	66.0	NA	Calu-3;Calu-3
vc_MERS-CoV_741	MERS-CoV	NC_019843.3	-	11132	11495	363	4.390598939	70.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_742	MERS-CoV	NC_019843.3	-	11132	11511	379	6.732585447	109.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_743	MERS-CoV	NC_019843.3	-	11132	11521	389	7.273046851	120.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_744	MERS-CoV	NC_019843.3	-	11132	11526	394	8.000541619	129.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_745	MERS-CoV	NC_019843.3	-	11132	11540	408	3.385768454	53.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_746	MERS-CoV	NC_019843.3	-	11132	11546	414	7.681656093	120.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_747	MERS-CoV	NC_019843.3	-	11132	11573	441	1.703026238	28.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_748	MERS-CoV	NC_019843.3	-	11132	11607	475	1.586980323	28.0	NA	Calu-3
vc_MERS-CoV_749	MERS-CoV	NC_019843.3	-	11132	11611	479	3.946162366	72.5	NA	Calu-3;Calu-3
vc_MERS-CoV_750	MERS-CoV	NC_019843.3	-	11132	11623	491	3.024197452	49.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_751	MERS-CoV	NC_019843.3	-	11132	11628	496	0.85016803	15.0	NA	Calu-3
vc_MERS-CoV_752	MERS-CoV	NC_019843.3	-	11132	11630	498	12.31842433	197.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_753	MERS-CoV	NC_019843.3	-	11132	11709	577	0.677617631	9.5	NA	Calu-3;Calu-3
vc_MERS-CoV_754	MERS-CoV	NC_019843.3	-	11132	11717	585	2.491132616	39.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_755	MERS-CoV	NC_019843.3	-	11132	11721	589	0.665297921	11.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_756	MERS-CoV	NC_019843.3	-	11132	11727	595	1.578519552	25.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_757	MERS-CoV	NC_019843.3	-	11132	11736	604	1.904378362	35.0	NA	Calu-3;Calu-3
vc_MERS-CoV_758	MERS-CoV	NC_019843.3	-	11132	11745	613	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_759	MERS-CoV	NC_019843.3	-	11132	11819	687	0.387330637	6.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_760	MERS-CoV	NC_019843.3	-	11132	11828	696	0.629238997	10.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_761	MERS-CoV	NC_019843.3	-	11132	11841	709	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_762	MERS-CoV	NC_019843.3	-	11132	11985	853	1.757013929	31.0	NA	Calu-3
vc_MERS-CoV_763	MERS-CoV	NC_019843.3	-	11132	11994	862	14.99756558	218.5	NA	Calu-3;Calu-3
vc_MERS-CoV_764	MERS-CoV	NC_019843.3	-	11132	12724	1592	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_765	MERS-CoV	NC_019843.3	-	11132	22916	11784	24.03141632	424.0	NA	Calu-3
vc_MERS-CoV_766	MERS-CoV	NC_019843.3	-	11141	11495	354	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_767	MERS-CoV	NC_019843.3	+	11188	11595	407	1.848496976	29.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_768	MERS-CoV	NC_019843.3	-	11201	11352	151	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_769	MERS-CoV	NC_019843.3	-	11204	11626	422	0.294572161	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_770	MERS-CoV	NC_019843.3	-	11204	12094	890	0.310028731	5.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_771	MERS-CoV	NC_019843.3	-	11252	11717	465	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_772	MERS-CoV	NC_019843.3	+	11300	11595	295	0.818000311	15.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_773	MERS-CoV	NC_019843.3	+	11317	11595	278	1.58709761	25.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_774	MERS-CoV	NC_019843.3	+	11326	11595	269	0.420826854	7.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_775	MERS-CoV	NC_019843.3	+	11368	11595	227	0.526737563	9.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_776	MERS-CoV	NC_019843.3	+	11378	11595	217	0.333633668	6.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_777	MERS-CoV	NC_019843.3	-	11397	12094	697	2.859784315	52.5	NA	Calu-3;Calu-3
vc_MERS-CoV_778	MERS-CoV	NC_019843.3	-	11455	11628	173	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_779	MERS-CoV	NC_019843.3	-	11477	12094	617	3.225750308	46.0	NA	Calu-3;Calu-3
vc_MERS-CoV_780	MERS-CoV	NC_019843.3	-	11489	12094	605	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_781	MERS-CoV	NC_019843.3	-	11496	11639	143	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_782	MERS-CoV	NC_019843.3	-	11496	11736	240	1.079541678	15.5	NA	Calu-3;Calu-3
vc_MERS-CoV_783	MERS-CoV	NC_019843.3	-	11496	11745	249	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_784	MERS-CoV	NC_019843.3	-	11496	11828	332	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_785	MERS-CoV	NC_019843.3	-	11496	16955	5459	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_786	MERS-CoV	NC_019843.3	-	11513	11727	214	2.36349539	38.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_787	MERS-CoV	NC_019843.3	-	11532	12094	562	4.667686469	76.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_788	MERS-CoV	NC_019843.3	-	11546	12094	548	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_789	MERS-CoV	NC_019843.3	-	11575	11727	152	0.163600062	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_790	MERS-CoV	NC_019843.3	-	11575	12094	519	1.441092225	24.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_791	MERS-CoV	NC_019843.3	+	11596	12076	480	8.177858591	150.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_792	MERS-CoV	NC_019843.3	-	11609	12094	485	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_793	MERS-CoV	NC_019843.3	-	11640	12014	374	1.757013929	31.0	NA	Calu-3
vc_MERS-CoV_794	MERS-CoV	NC_019843.3	-	11640	16699	5059	4.534229494	80.0	NA	Calu-3
vc_MERS-CoV_795	MERS-CoV	NC_019843.3	-	11656	12090	434	14.97187943	242.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_796	MERS-CoV	NC_019843.3	+	11679	12568	889	5.55443113	98.0	orf1ab	Calu-3
vc_MERS-CoV_797	MERS-CoV	NC_019843.3	-	11728	12014	286	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_798	MERS-CoV	NC_019843.3	-	11728	12048	320	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_799	MERS-CoV	NC_019843.3	-	11728	12090	362	1.231552143	21.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_800	MERS-CoV	NC_019843.3	-	11728	12094	366	0.44430006	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_801	MERS-CoV	NC_019843.3	-	11728	12466	738	0.296716676	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_802	MERS-CoV	NC_019843.3	-	11728	12508	780	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_803	MERS-CoV	NC_019843.3	-	11728	12570	842	0.561672411	8.0	NA	Calu-3;Calu-3
vc_MERS-CoV_804	MERS-CoV	NC_019843.3	+	11745	12076	331	6.347921291	112.0	orf1ab	Calu-3
vc_MERS-CoV_805	MERS-CoV	NC_019843.3	-	11786	12094	308	0.216426232	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_806	MERS-CoV	NC_019843.3	-	11788	12014	226	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_807	MERS-CoV	NC_019843.3	-	11788	12063	275	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_808	MERS-CoV	NC_019843.3	-	11788	12085	297	1.065500737	17.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_809	MERS-CoV	NC_019843.3	-	11788	12090	302	0.721975789	12.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_810	MERS-CoV	NC_019843.3	-	11788	12094	306	0.161455548	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_811	MERS-CoV	NC_019843.3	-	11788	12462	674	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_812	MERS-CoV	NC_019843.3	-	11788	12744	956	7.198089321	127.0	NA	Calu-3
vc_MERS-CoV_813	MERS-CoV	NC_019843.3	-	11788	12792	1004	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_814	MERS-CoV	NC_019843.3	+	11799	12076	277	0.628942351	10.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_815	MERS-CoV	NC_019843.3	-	11825	12094	269	2.008517755	31.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_816	MERS-CoV	NC_019843.3	-	11875	12094	219	0.172623089	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_817	MERS-CoV	NC_019843.3	-	12068	12371	303	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_818	MERS-CoV	NC_019843.3	+	12091	12342	251	0.85016803	15.0	orf1ab	Calu-3
vc_MERS-CoV_819	MERS-CoV	NC_019843.3	-	12095	12356	261	0.511292493	8.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_820	MERS-CoV	NC_019843.3	-	12095	12371	276	0.57581699	10.5	NA	Calu-3;Calu-3
vc_MERS-CoV_821	MERS-CoV	NC_019843.3	-	12095	12411	316	5.245966302	85.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_822	MERS-CoV	NC_019843.3	-	12095	12413	318	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_823	MERS-CoV	NC_019843.3	-	12095	12435	340	0.407927898	7.5	NA	Calu-3;Calu-3
vc_MERS-CoV_824	MERS-CoV	NC_019843.3	-	12095	12446	351	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_825	MERS-CoV	NC_019843.3	-	12095	12462	367	0.419392085	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_826	MERS-CoV	NC_019843.3	-	12095	12466	371	1.823650588	33.5	NA	Calu-3;Calu-3
vc_MERS-CoV_827	MERS-CoV	NC_019843.3	-	12095	12503	408	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_828	MERS-CoV	NC_019843.3	-	12095	12570	475	1.22039101	19.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_829	MERS-CoV	NC_019843.3	-	12095	12744	649	1.205772141	18.0	NA	Calu-3;Calu-3
vc_MERS-CoV_830	MERS-CoV	NC_019843.3	+	12112	12337	225	0.135261128	2.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_831	MERS-CoV	NC_019843.3	-	12155	12356	201	0.268377741	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_832	MERS-CoV	NC_019843.3	-	12155	12411	256	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_833	MERS-CoV	NC_019843.3	-	12155	12435	280	0.285978827	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_834	MERS-CoV	NC_019843.3	-	12155	12466	311	0.167470899	2.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_835	MERS-CoV	NC_019843.3	-	12155	12508	353	0.426842205	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_836	MERS-CoV	NC_019843.3	-	12155	12570	415	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_837	MERS-CoV	NC_019843.3	-	12155	12744	589	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_838	MERS-CoV	NC_019843.3	+	12174	13859	1685	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_839	MERS-CoV	NC_019843.3	-	12207	12371	164	0.345246179	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_840	MERS-CoV	NC_019843.3	+	12320	12681	361	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_841	MERS-CoV	NC_019843.3	-	12468	12642	174	0.455747655	7.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_842	MERS-CoV	NC_019843.3	-	12468	12702	234	0.799569248	12.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_843	MERS-CoV	NC_019843.3	-	12641	12929	288	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_844	MERS-CoV	NC_019843.3	-	12641	14882	2241	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_845	MERS-CoV	NC_019843.3	-	12676	29095	16419	21.93433518	387.0	NA	Calu-3
vc_MERS-CoV_846	MERS-CoV	NC_019843.3	+	12682	12955	273	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_847	MERS-CoV	NC_019843.3	+	12682	13952	1270	2.040403272	36.0	orf1ab	Calu-3
vc_MERS-CoV_848	MERS-CoV	NC_019843.3	+	12829	13092	263	0.194083511	3.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_849	MERS-CoV	NC_019843.3	+	12829	13194	365	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_850	MERS-CoV	NC_019843.3	-	12898	13128	230	0.135261128	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_851	MERS-CoV	NC_019843.3	-	12898	13155	257	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_852	MERS-CoV	NC_019843.3	-	12898	13336	438	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_853	MERS-CoV	NC_019843.3	-	13036	21058	8022	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_854	MERS-CoV	NC_019843.3	+	13093	13269	176	0.611770958	9.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_855	MERS-CoV	NC_019843.3	+	13093	13294	201	0.485246396	7.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_856	MERS-CoV	NC_019843.3	+	13093	13296	203	0.892904424	14.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_857	MERS-CoV	NC_019843.3	+	13093	13298	205	1.092436771	17.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_858	MERS-CoV	NC_019843.3	+	13093	13302	209	1.003395717	16.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_859	MERS-CoV	NC_019843.3	+	13093	13310	217	0.200962024	3.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_860	MERS-CoV	NC_019843.3	+	13093	13324	231	0.214135941	3.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_861	MERS-CoV	NC_019843.3	+	13093	13338	245	0.273104101	4.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_862	MERS-CoV	NC_019843.3	+	13093	13343	250	0.719704636	11.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_863	MERS-CoV	NC_019843.3	+	13093	13347	254	1.588823933	25.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_864	MERS-CoV	NC_019843.3	+	13093	13369	276	1.937479386	31.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_865	MERS-CoV	NC_019843.3	+	13093	13680	587	1.643658191	29.0	orf1ab	Calu-3
vc_MERS-CoV_866	MERS-CoV	NC_019843.3	+	13093	13952	859	10.06874435	149.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_867	MERS-CoV	NC_019843.3	+	13093	13954	861	0.623456555	11.0	orf1ab	Calu-3
vc_MERS-CoV_868	MERS-CoV	NC_019843.3	-	13402	13716	314	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_869	MERS-CoV	NC_019843.3	-	13517	13716	199	0.832187028	12.5	NA	Calu-3;Calu-3
vc_MERS-CoV_870	MERS-CoV	NC_019843.3	-	13517	13722	205	0.244765167	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_871	MERS-CoV	NC_019843.3	-	13517	13804	287	14.79292372	261.0	NA	Calu-3
vc_MERS-CoV_872	MERS-CoV	NC_019843.3	+	13538	13680	142	0.40622326	6.666666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_873	MERS-CoV	NC_019843.3	+	13538	13738	200	0.191938997	3.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_874	MERS-CoV	NC_019843.3	+	13538	13766	228	2.228075756	35.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_875	MERS-CoV	NC_019843.3	+	13538	13870	332	0.191938997	3.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_876	MERS-CoV	NC_019843.3	+	13538	13896	358	1.249004906	20.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_877	MERS-CoV	NC_019843.3	+	13538	13921	383	0.566778687	10.0	orf1ab	Calu-3
vc_MERS-CoV_878	MERS-CoV	NC_019843.3	+	13538	13952	414	0.481793752	8.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_879	MERS-CoV	NC_019843.3	+	13538	14110	572	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_880	MERS-CoV	NC_019843.3	+	13538	14248	710	7.268407933	133.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_881	MERS-CoV	NC_019843.3	+	13538	14331	793	1.105678683	20.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_882	MERS-CoV	NC_019843.3	+	13538	21175	7637	0.453422949	8.0	orf1ab	Calu-3
vc_MERS-CoV_883	MERS-CoV	NC_019843.3	-	13559	13875	316	8.948219335	164.5	NA	Calu-3;Calu-3
vc_MERS-CoV_884	MERS-CoV	NC_019843.3	-	13573	13804	231	6.234565554	110.0	NA	Calu-3
vc_MERS-CoV_885	MERS-CoV	NC_019843.3	+	13579	13865	286	0.466750282	8.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_886	MERS-CoV	NC_019843.3	+	13579	13906	327	13.28339305	215.3333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_887	MERS-CoV	NC_019843.3	+	13579	13930	351	37.50622322	605.6666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_888	MERS-CoV	NC_019843.3	+	13579	13952	373	8.663519926	141.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_889	MERS-CoV	NC_019843.3	+	13579	14331	752	2.508074042	45.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_890	MERS-CoV	NC_019843.3	+	13579	28233	14654	0.170033606	3.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_891	MERS-CoV	NC_019843.3	-	13598	13804	206	6.121209816	108.0	NA	Calu-3
vc_MERS-CoV_892	MERS-CoV	NC_019843.3	-	13598	13942	344	0.730838993	13.5	NA	Calu-3;Calu-3
vc_MERS-CoV_893	MERS-CoV	NC_019843.3	-	13876	14161	285	0.461191399	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_894	MERS-CoV	NC_019843.3	-	13944	14161	217	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_895	MERS-CoV	NC_019843.3	-	13944	14256	312	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_896	MERS-CoV	NC_019843.3	-	13953	14256	303	2.456145446	45.0	NA	Calu-3;Calu-3
vc_MERS-CoV_897	MERS-CoV	NC_019843.3	-	13959	14256	297	0.167470899	2.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_898	MERS-CoV	NC_019843.3	-	13976	14161	185	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_899	MERS-CoV	NC_019843.3	-	14045	14381	336	0.144284155	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_900	MERS-CoV	NC_019843.3	-	14045	14409	364	0.161455548	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_901	MERS-CoV	NC_019843.3	-	14091	23505	9414	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_902	MERS-CoV	NC_019843.3	+	14100	14600	500	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_903	MERS-CoV	NC_019843.3	+	14466	14690	224	2.643795413	48.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_904	MERS-CoV	NC_019843.3	+	14466	14817	351	3.395783914	49.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_905	MERS-CoV	NC_019843.3	+	14466	14820	354	1.530302454	27.0	orf1ab	Calu-3
vc_MERS-CoV_906	MERS-CoV	NC_019843.3	+	14519	14690	171	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_907	MERS-CoV	NC_019843.3	-	14590	14856	266	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_908	MERS-CoV	NC_019843.3	-	14617	14882	265	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_909	MERS-CoV	NC_019843.3	-	14629	14882	253	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_910	MERS-CoV	NC_019843.3	+	14691	14867	176	0.908932602	14.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_911	MERS-CoV	NC_019843.3	+	14691	14890	199	0.200962024	3.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_912	MERS-CoV	NC_019843.3	+	14691	14912	221	0.548797685	7.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_913	MERS-CoV	NC_019843.3	+	14691	15079	388	0.746883763	12.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_914	MERS-CoV	NC_019843.3	-	15031	15250	219	0.135261128	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_915	MERS-CoV	NC_019843.3	-	15441	15655	214	0.131115329	2.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_916	MERS-CoV	NC_019843.3	-	15441	15666	225	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_917	MERS-CoV	NC_019843.3	-	15441	15686	245	0.688776218	11.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_918	MERS-CoV	NC_019843.3	-	15563	15926	363	0.680134424	12.0	NA	Calu-3
vc_MERS-CoV_919	MERS-CoV	NC_019843.3	-	15608	15926	318	0.963523767	17.0	NA	Calu-3
vc_MERS-CoV_920	MERS-CoV	NC_019843.3	-	15668	15926	258	0.379588964	7.0	NA	Calu-3;Calu-3
vc_MERS-CoV_921	MERS-CoV	NC_019843.3	+	16077	16403	326	3.100366327	50.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_922	MERS-CoV	NC_019843.3	-	16390	16908	518	0.438411347	8.0	NA	Calu-3;Calu-3
vc_MERS-CoV_923	MERS-CoV	NC_019843.3	-	16487	16890	403	2.271100238	42.0	NA	Calu-3;Calu-3
vc_MERS-CoV_924	MERS-CoV	NC_019843.3	-	16487	16908	421	1.725306453	31.5	NA	Calu-3;Calu-3
vc_MERS-CoV_925	MERS-CoV	NC_019843.3	+	16503	16831	328	3.684061464	65.0	orf1ab	Calu-3
vc_MERS-CoV_926	MERS-CoV	NC_019843.3	+	16503	16854	351	41.08134202	660.3333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_927	MERS-CoV	NC_019843.3	+	16503	17332	829	1.530302454	27.0	orf1ab	Calu-3
vc_MERS-CoV_928	MERS-CoV	NC_019843.3	+	16518	16854	336	22.21772452	392.0	orf1ab	Calu-3
vc_MERS-CoV_929	MERS-CoV	NC_019843.3	+	16518	16871	353	12.34360085	200.3333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_930	MERS-CoV	NC_019843.3	+	16531	16678	147	0.495259222	7.666666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_931	MERS-CoV	NC_019843.3	+	16531	16747	216	0.270813809	4.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_932	MERS-CoV	NC_019843.3	+	16531	16757	226	0.612914173	10.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_933	MERS-CoV	NC_019843.3	+	16531	16831	300	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_934	MERS-CoV	NC_019843.3	+	16531	16854	323	1.944098213	31.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_935	MERS-CoV	NC_019843.3	+	16531	16959	428	0.458172223	8.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_936	MERS-CoV	NC_019843.3	+	16531	17119	588	0.381733479	7.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_937	MERS-CoV	NC_019843.3	+	16531	17224	693	1.718535132	23.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_938	MERS-CoV	NC_019843.3	+	16531	17332	801	0.340067212	6.0	orf1ab	Calu-3
vc_MERS-CoV_939	MERS-CoV	NC_019843.3	-	16540	16829	289	3.65402974	58.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_940	MERS-CoV	NC_019843.3	-	16540	16844	304	1.48691579	23.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_941	MERS-CoV	NC_019843.3	-	16540	16890	350	0.930679486	14.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_942	MERS-CoV	NC_019843.3	-	16540	16898	358	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_943	MERS-CoV	NC_019843.3	-	16540	16955	415	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_944	MERS-CoV	NC_019843.3	-	16540	17042	502	1.927047535	34.0	NA	Calu-3
vc_MERS-CoV_945	MERS-CoV	NC_019843.3	-	16540	17144	604	0.85016803	15.0	NA	Calu-3
vc_MERS-CoV_946	MERS-CoV	NC_019843.3	-	16540	17306	766	3.879841094	62.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_947	MERS-CoV	NC_019843.3	-	16540	29210	12670	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_948	MERS-CoV	NC_019843.3	-	16552	17306	754	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_949	MERS-CoV	NC_019843.3	-	16568	16890	322	9.158224134	146.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_950	MERS-CoV	NC_019843.3	-	16568	16908	340	3.365456338	54.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_951	MERS-CoV	NC_019843.3	-	16582	16890	308	1.339283946	24.5	NA	Calu-3;Calu-3
vc_MERS-CoV_952	MERS-CoV	NC_019843.3	-	16585	17306	721	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_953	MERS-CoV	NC_019843.3	-	16623	16890	267	2.216638345	35.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_954	MERS-CoV	NC_019843.3	-	16623	16908	285	0.787825007	12.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_955	MERS-CoV	NC_019843.3	-	16728	17345	617	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_956	MERS-CoV	NC_019843.3	-	16802	17057	255	0.360710387	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_957	MERS-CoV	NC_019843.3	-	16852	17306	454	0.673881071	11.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_958	MERS-CoV	NC_019843.3	-	16855	17306	451	8.003920344	128.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_959	MERS-CoV	NC_019843.3	-	16855	17356	501	1.133557373	20.0	NA	Calu-3
vc_MERS-CoV_960	MERS-CoV	NC_019843.3	+	16872	17224	352	0.963884149	15.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_961	MERS-CoV	NC_019843.3	+	16872	17279	407	2.197147338	35.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_962	MERS-CoV	NC_019843.3	-	16891	17291	400	1.424300749	26.0	NA	Calu-3;Calu-3
vc_MERS-CoV_963	MERS-CoV	NC_019843.3	-	16891	17293	402	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_964	MERS-CoV	NC_019843.3	-	16891	17306	415	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_965	MERS-CoV	NC_019843.3	-	16891	22935	6044	3.684061464	65.0	NA	Calu-3
vc_MERS-CoV_966	MERS-CoV	NC_019843.3	-	16891	29089	12198	9.691915542	171.0	NA	Calu-3
vc_MERS-CoV_967	MERS-CoV	NC_019843.3	-	16909	17282	373	0.399334564	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_968	MERS-CoV	NC_019843.3	-	16909	17303	394	4.252642057	68.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_969	MERS-CoV	NC_019843.3	-	16909	17306	397	0.865121821	13.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_970	MERS-CoV	NC_019843.3	-	16909	17317	408	0.566778687	10.0	NA	Calu-3
vc_MERS-CoV_971	MERS-CoV	NC_019843.3	-	16909	17356	447	3.587323769	56.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_972	MERS-CoV	NC_019843.3	-	16909	17444	535	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_973	MERS-CoV	NC_019843.3	-	16909	17569	660	3.616817728	66.5	NA	Calu-3;Calu-3
vc_MERS-CoV_974	MERS-CoV	NC_019843.3	-	16909	17619	710	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_975	MERS-CoV	NC_019843.3	-	16909	29160	12251	2.833893433	50.0	NA	Calu-3
vc_MERS-CoV_976	MERS-CoV	NC_019843.3	+	16942	17222	280	0.200962024	3.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_977	MERS-CoV	NC_019843.3	+	16942	17279	337	0.39018999	6.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_978	MERS-CoV	NC_019843.3	+	16942	17336	394	3.968892332	64.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_979	MERS-CoV	NC_019843.3	-	16978	17306	328	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_980	MERS-CoV	NC_019843.3	-	16983	17306	323	0.242183321	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_981	MERS-CoV	NC_019843.3	-	16983	17317	334	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_982	MERS-CoV	NC_019843.3	+	17025	17274	249	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_983	MERS-CoV	NC_019843.3	+	17025	17332	307	0.296716676	5.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_984	MERS-CoV	NC_019843.3	+	17025	17893	868	0.340067212	6.0	orf1ab	Calu-3
vc_MERS-CoV_985	MERS-CoV	NC_019843.3	-	17055	17345	290	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_986	MERS-CoV	NC_019843.3	-	17058	17306	248	0.27266677	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_987	MERS-CoV	NC_019843.3	-	17058	17345	287	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_988	MERS-CoV	NC_019843.3	-	17110	17356	246	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_989	MERS-CoV	NC_019843.3	+	17112	17504	392	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_990	MERS-CoV	NC_019843.3	-	17284	18059	775	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_991	MERS-CoV	NC_019843.3	+	17333	17589	256	0.380177163	6.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_992	MERS-CoV	NC_019843.3	+	17333	17836	503	0.680134424	12.0	orf1ab	Calu-3
vc_MERS-CoV_993	MERS-CoV	NC_019843.3	-	17347	17569	222	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_994	MERS-CoV	NC_019843.3	-	17347	17574	227	6.949785867	127.5	NA	Calu-3;Calu-3
vc_MERS-CoV_995	MERS-CoV	NC_019843.3	-	17347	17736	389	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_996	MERS-CoV	NC_019843.3	-	17347	17844	497	0.288276756	4.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_997	MERS-CoV	NC_019843.3	-	17347	18035	688	0.336376566	5.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_998	MERS-CoV	NC_019843.3	-	17347	18054	707	0.560228688	9.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_999	MERS-CoV	NC_019843.3	+	17385	17692	307	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_1000	MERS-CoV	NC_019843.3	+	17390	17692	302	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_1001	MERS-CoV	NC_019843.3	-	17534	18059	525	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1002	MERS-CoV	NC_019843.3	-	17631	17844	213	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1003	MERS-CoV	NC_019843.3	-	17631	18054	423	0.165744577	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1004	MERS-CoV	NC_019843.3	-	17631	18059	428	0.87085071	14.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1005	MERS-CoV	NC_019843.3	-	17753	18059	306	0.36128454	5.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1006	MERS-CoV	NC_019843.3	-	17794	18035	241	0.662978307	12.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1007	MERS-CoV	NC_019843.3	-	17794	18059	265	1.167419063	19.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1008	MERS-CoV	NC_019843.3	-	17817	18059	242	0.355539059	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1009	MERS-CoV	NC_019843.3	-	17876	18035	159	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1010	MERS-CoV	NC_019843.3	-	17885	18035	150	16.37990405	289.0	NA	Calu-3
vc_MERS-CoV_1011	MERS-CoV	NC_019843.3	-	17885	18047	162	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1012	MERS-CoV	NC_019843.3	-	17885	25106	7221	56.22444572	992.0	NA	Calu-3
vc_MERS-CoV_1013	MERS-CoV	NC_019843.3	-	17905	18059	154	0.736812293	13.0	NA	Calu-3
vc_MERS-CoV_1014	MERS-CoV	NC_019843.3	+	17919	18079	160	0.109066708	2.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1015	MERS-CoV	NC_019843.3	+	17919	18428	509	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_1016	MERS-CoV	NC_019843.3	+	17919	27066	9147	0.906845899	16.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_1017	MERS-CoV	NC_019843.3	+	18085	18605	520	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_1018	MERS-CoV	NC_019843.3	+	18429	18926	497	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_1019	MERS-CoV	NC_019843.3	+	18931	19226	295	0.231598887	3.666666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1020	MERS-CoV	NC_019843.3	+	19227	19567	340	1.246913111	22.0	orf1ab	Calu-3
vc_MERS-CoV_1021	MERS-CoV	NC_019843.3	-	19311	19589	278	1.361189336	25.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1022	MERS-CoV	NC_019843.3	-	19311	19724	413	0.240038807	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1023	MERS-CoV	NC_019843.3	-	19311	19733	422	6.639587914	94.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1024	MERS-CoV	NC_019843.3	+	19506	19953	447	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_1025	MERS-CoV	NC_019843.3	+	19506	20118	612	1.530302454	27.0	orf1ab	Calu-3
vc_MERS-CoV_1026	MERS-CoV	NC_019843.3	-	19531	19733	202	1.543593659	24.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1027	MERS-CoV	NC_019843.3	-	19531	19825	294	3.343994252	59.0	NA	Calu-3
vc_MERS-CoV_1028	MERS-CoV	NC_019843.3	-	19531	19907	376	6.922977258	99.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1029	MERS-CoV	NC_019843.3	-	19531	20009	478	5.271041786	93.0	NA	Calu-3
vc_MERS-CoV_1030	MERS-CoV	NC_019843.3	-	19531	20458	927	1.757013929	31.0	NA	Calu-3
vc_MERS-CoV_1031	MERS-CoV	NC_019843.3	-	19564	19985	421	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1032	MERS-CoV	NC_019843.3	+	19575	19919	344	3.296051148	60.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1033	MERS-CoV	NC_019843.3	+	19575	19959	384	1.70033606	30.0	orf1ab	Calu-3
vc_MERS-CoV_1034	MERS-CoV	NC_019843.3	-	19608	20132	524	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1035	MERS-CoV	NC_019843.3	-	19641	19825	184	0.710824839	11.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1036	MERS-CoV	NC_019843.3	-	19641	19961	320	5.64567784	89.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1037	MERS-CoV	NC_019843.3	-	19641	19985	344	6.819350256	109.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1038	MERS-CoV	NC_019843.3	-	19641	20033	392	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1039	MERS-CoV	NC_019843.3	-	19641	20532	891	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1040	MERS-CoV	NC_019843.3	-	19714	26546	6832	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1041	MERS-CoV	NC_019843.3	-	19791	19985	194	0.394775665	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1042	MERS-CoV	NC_019843.3	-	19791	25243	5452	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1043	MERS-CoV	NC_019843.3	-	20079	20665	586	18.50442338	339.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1044	MERS-CoV	NC_019843.3	+	20234	20512	278	0.137405643	2.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1045	MERS-CoV	NC_019843.3	+	20301	21224	923	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_1046	MERS-CoV	NC_019843.3	+	20346	20953	607	0.283389343	5.0	orf1ab	Calu-3
vc_MERS-CoV_1047	MERS-CoV	NC_019843.3	+	20376	20650	274	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_1048	MERS-CoV	NC_019843.3	+	20376	20659	283	0.298289583	5.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1049	MERS-CoV	NC_019843.3	-	20407	21058	651	1.456928712	26.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1050	MERS-CoV	NC_019843.3	-	20495	20665	170	0.802528464	14.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1051	MERS-CoV	NC_019843.3	-	20495	20680	185	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1052	MERS-CoV	NC_019843.3	-	20495	21048	553	3.136740115	57.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1053	MERS-CoV	NC_019843.3	+	20513	20907	394	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_1054	MERS-CoV	NC_019843.3	+	20513	21100	587	5.685427409	90.33333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1055	MERS-CoV	NC_019843.3	+	20513	29838	9325	19.27047535	340.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1056	MERS-CoV	NC_019843.3	+	20522	20719	197	0.427975236	7.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1057	MERS-CoV	NC_019843.3	+	20522	20798	276	0.438284708	7.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1058	MERS-CoV	NC_019843.3	+	20522	20953	431	0.832187028	12.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1059	MERS-CoV	NC_019843.3	+	20522	22241	1719	1.190235242	21.0	orf1ab;S	Calu-3
vc_MERS-CoV_1060	MERS-CoV	NC_019843.3	-	20539	21067	528	4.477551625	79.0	NA	Calu-3
vc_MERS-CoV_1061	MERS-CoV	NC_019843.3	+	20576	20719	143	0.419100531	7.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1062	MERS-CoV	NC_019843.3	+	20576	20798	222	0.205256144	3.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1063	MERS-CoV	NC_019843.3	+	20576	20800	224	0.262230659	4.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1064	MERS-CoV	NC_019843.3	+	20576	20907	331	0.720546113	12.0	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1065	MERS-CoV	NC_019843.3	+	20576	20945	369	0.148578276	2.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1066	MERS-CoV	NC_019843.3	+	20576	20947	371	0.396745081	7.0	orf1ab	Calu-3
vc_MERS-CoV_1067	MERS-CoV	NC_019843.3	+	20576	20957	381	0.113355737	2.0	orf1ab	Calu-3
vc_MERS-CoV_1068	MERS-CoV	NC_019843.3	+	20576	20959	383	0.170033606	3.0	orf1ab	Calu-3
vc_MERS-CoV_1069	MERS-CoV	NC_019843.3	+	20576	20980	404	0.216995293	3.333333333	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1070	MERS-CoV	NC_019843.3	+	20576	21016	440	0.327200124	6.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1071	MERS-CoV	NC_019843.3	+	20576	21100	524	0.856247117	13.66666667	orf1ab	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1072	MERS-CoV	NC_019843.3	+	20576	22397	1821	1.927047535	34.0	orf1ab;S	Calu-3
vc_MERS-CoV_1073	MERS-CoV	NC_019843.3	-	20584	20921	337	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1074	MERS-CoV	NC_019843.3	-	20584	20977	393	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1075	MERS-CoV	NC_019843.3	-	20584	21048	464	1.474545074	27.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1076	MERS-CoV	NC_019843.3	-	20584	21088	504	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1077	MERS-CoV	NC_019843.3	-	20584	26000	5416	4.534229494	80.0	NA	Calu-3
vc_MERS-CoV_1078	MERS-CoV	NC_019843.3	-	20591	21058	467	2.153759009	38.0	NA	Calu-3
vc_MERS-CoV_1079	MERS-CoV	NC_019843.3	-	20622	20768	146	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1080	MERS-CoV	NC_019843.3	-	20622	20921	299	0.419977739	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1081	MERS-CoV	NC_019843.3	-	20622	21058	436	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1082	MERS-CoV	NC_019843.3	-	20666	20866	200	0.369867691	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1083	MERS-CoV	NC_019843.3	-	20666	20930	264	0.390486636	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1084	MERS-CoV	NC_019843.3	-	20666	20977	311	1.001361249	18.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1085	MERS-CoV	NC_019843.3	-	20666	21041	375	0.233028564	3.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1086	MERS-CoV	NC_019843.3	-	20666	21048	382	3.536628067	57.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1087	MERS-CoV	NC_019843.3	-	20666	21053	387	0.680134424	12.0	NA	Calu-3
vc_MERS-CoV_1088	MERS-CoV	NC_019843.3	-	20666	21082	416	1.717041633	29.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1089	MERS-CoV	NC_019843.3	-	20666	21088	422	1.455685635	23.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1090	MERS-CoV	NC_019843.3	-	20666	21148	482	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1091	MERS-CoV	NC_019843.3	-	20666	21164	498	0.746888855	12.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1092	MERS-CoV	NC_019843.3	-	20666	26500	5834	0.621772285	11.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1093	MERS-CoV	NC_019843.3	-	20693	21058	365	7.467740245	122.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1094	MERS-CoV	NC_019843.3	-	20770	21058	288	0.905161629	16.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1095	MERS-CoV	NC_019843.3	-	20808	21058	250	2.437293733	37.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1096	MERS-CoV	NC_019843.3	-	20848	21086	238	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1097	MERS-CoV	NC_019843.3	+	20892	21224	332	1.076879505	19.0	orf1ab	Calu-3
vc_MERS-CoV_1098	MERS-CoV	NC_019843.3	+	21225	21543	318	7.188391745	115.3333333	orf1ab;S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1099	MERS-CoV	NC_019843.3	+	21225	21551	326	0.520458751	7.0	orf1ab;S	Calu-3;Calu-3
vc_MERS-CoV_1100	MERS-CoV	NC_019843.3	-	21407	22916	1509	6.744666372	119.0	NA	Calu-3
vc_MERS-CoV_1101	MERS-CoV	NC_019843.3	-	21496	21729	233	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1102	MERS-CoV	NC_019843.3	-	21496	21792	296	0.66385806	10.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1103	MERS-CoV	NC_019843.3	-	21496	21965	469	0.36329987	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1104	MERS-CoV	NC_019843.3	-	21510	25243	3733	2.55050409	45.0	NA	Calu-3
vc_MERS-CoV_1105	MERS-CoV	NC_019843.3	+	21552	21751	199	0.113355737	2.0	S	Calu-3
vc_MERS-CoV_1106	MERS-CoV	NC_019843.3	+	21552	21787	235	1.689015936	27.33333333	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1107	MERS-CoV	NC_019843.3	+	21552	21799	247	1.174843723	18.0	S	Calu-3;Calu-3
vc_MERS-CoV_1108	MERS-CoV	NC_019843.3	+	21552	21903	351	0.170033606	3.0	S	Calu-3
vc_MERS-CoV_1109	MERS-CoV	NC_019843.3	+	21552	21962	410	1.690737166	26.66666667	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1110	MERS-CoV	NC_019843.3	+	21552	22095	543	0.170033606	3.0	S	Calu-3
vc_MERS-CoV_1111	MERS-CoV	NC_019843.3	+	21552	22158	606	0.792124221	13.0	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1112	MERS-CoV	NC_019843.3	+	21552	22174	622	0.32978197	5.0	S	Calu-3;Calu-3
vc_MERS-CoV_1113	MERS-CoV	NC_019843.3	+	21552	22213	661	1.71423074	27.66666667	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1114	MERS-CoV	NC_019843.3	+	21552	22241	689	0.170033606	3.0	S	Calu-3
vc_MERS-CoV_1115	MERS-CoV	NC_019843.3	+	21552	22288	736	0.340067212	6.0	S	Calu-3
vc_MERS-CoV_1116	MERS-CoV	NC_019843.3	+	21552	22826	1274	0.113355737	2.0	S	Calu-3
vc_MERS-CoV_1117	MERS-CoV	NC_019843.3	+	21552	22887	1335	8.95510325	158.0	S	Calu-3
vc_MERS-CoV_1118	MERS-CoV	NC_019843.3	+	21552	29130	7578	21.7076237	383.0	S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1119	MERS-CoV	NC_019843.3	-	21717	22168	451	0.27266677	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1120	MERS-CoV	NC_019843.3	-	21740	21965	225	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1121	MERS-CoV	NC_019843.3	-	21836	22098	262	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1122	MERS-CoV	NC_019843.3	+	21913	23031	1118	0.113355737	2.0	S	Calu-3
vc_MERS-CoV_1123	MERS-CoV	NC_019843.3	-	22061	22740	679	0.731706017	11.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1124	MERS-CoV	NC_019843.3	-	22061	22875	814	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1125	MERS-CoV	NC_019843.3	-	22061	22977	916	11.222218	198.0	NA	Calu-3
vc_MERS-CoV_1126	MERS-CoV	NC_019843.3	-	22061	25243	3182	5.724464736	101.0	NA	Calu-3
vc_MERS-CoV_1127	MERS-CoV	NC_019843.3	-	22061	28732	6671	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1128	MERS-CoV	NC_019843.3	-	22091	22973	882	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1129	MERS-CoV	NC_019843.3	+	22143	22574	431	0.113355737	2.0	S	Calu-3
vc_MERS-CoV_1130	MERS-CoV	NC_019843.3	-	22169	22493	324	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1131	MERS-CoV	NC_019843.3	-	22169	22703	534	1.661784574	25.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1132	MERS-CoV	NC_019843.3	-	22169	22970	801	6.234565554	110.0	NA	Calu-3
vc_MERS-CoV_1133	MERS-CoV	NC_019843.3	-	22169	25893	3724	1.190235242	21.0	NA	Calu-3
vc_MERS-CoV_1134	MERS-CoV	NC_019843.3	+	22240	22414	174	0.283389343	5.0	S	Calu-3
vc_MERS-CoV_1135	MERS-CoV	NC_019843.3	+	22240	22439	199	2.851206256	52.5	S	Calu-3;Calu-3
vc_MERS-CoV_1136	MERS-CoV	NC_019843.3	+	22240	23031	791	14.00434941	257.0	S	Calu-3;Calu-3
vc_MERS-CoV_1137	MERS-CoV	NC_019843.3	+	22240	23283	1043	49.42310148	872.0	S	Calu-3
vc_MERS-CoV_1138	MERS-CoV	NC_019843.3	-	22304	22513	209	0.605475554	8.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1139	MERS-CoV	NC_019843.3	-	22304	22725	421	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1140	MERS-CoV	NC_019843.3	-	22304	22916	612	3.910239956	62.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1141	MERS-CoV	NC_019843.3	-	22304	22937	633	3.737045259	59.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1142	MERS-CoV	NC_019843.3	-	22421	22916	495	1.189011216	22.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1143	MERS-CoV	NC_019843.3	-	22564	22802	238	0.397205325	7.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1144	MERS-CoV	NC_019843.3	-	22564	22870	306	0.36128454	5.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1145	MERS-CoV	NC_019843.3	-	22564	22916	352	4.780210913	78.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1146	MERS-CoV	NC_019843.3	-	22564	22920	356	3.27128987	52.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1147	MERS-CoV	NC_019843.3	-	22564	22929	365	1.458851817	24.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1148	MERS-CoV	NC_019843.3	-	22564	22935	371	1.016372851	18.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1149	MERS-CoV	NC_019843.3	-	22564	22937	373	4.122654666	66.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1150	MERS-CoV	NC_019843.3	-	22564	22948	384	0.85016803	15.0	NA	Calu-3
vc_MERS-CoV_1151	MERS-CoV	NC_019843.3	-	22564	22970	406	103.4889548	1674.333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1152	MERS-CoV	NC_019843.3	-	22564	22973	409	0.537047035	9.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1153	MERS-CoV	NC_019843.3	-	22564	23029	465	1.303590979	23.0	NA	Calu-3
vc_MERS-CoV_1154	MERS-CoV	NC_019843.3	-	22564	23278	714	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1155	MERS-CoV	NC_019843.3	-	22564	28732	6168	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1156	MERS-CoV	NC_019843.3	+	22594	22824	230	0.662438567	11.0	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1157	MERS-CoV	NC_019843.3	+	22594	22887	293	1.017702664	16.66666667	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1158	MERS-CoV	NC_019843.3	+	22594	22904	310	0.32505561	6.0	S	Calu-3;Calu-3
vc_MERS-CoV_1159	MERS-CoV	NC_019843.3	+	22594	22942	348	5.304418953	84.0	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1160	MERS-CoV	NC_019843.3	+	22594	22960	366	5.584667573	90.33333333	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1161	MERS-CoV	NC_019843.3	+	22594	23031	437	0.113355737	2.0	S	Calu-3
vc_MERS-CoV_1162	MERS-CoV	NC_019843.3	+	22594	23033	439	1.465046527	26.0	S	Calu-3;Calu-3
vc_MERS-CoV_1163	MERS-CoV	NC_019843.3	-	22615	22916	301	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1164	MERS-CoV	NC_019843.3	-	22615	22923	308	5.271041786	93.0	NA	Calu-3
vc_MERS-CoV_1165	MERS-CoV	NC_019843.3	-	22615	22929	314	0.590011345	8.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1166	MERS-CoV	NC_019843.3	-	22615	22935	320	85.7787015	1389.333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1167	MERS-CoV	NC_019843.3	-	22615	22973	358	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1168	MERS-CoV	NC_019843.3	-	22615	29089	6474	16.22949436	298.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1169	MERS-CoV	NC_019843.3	-	22631	22973	342	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1170	MERS-CoV	NC_019843.3	-	22633	22920	287	0.811610135	12.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1171	MERS-CoV	NC_019843.3	-	22633	22923	290	1.020201636	18.0	NA	Calu-3
vc_MERS-CoV_1172	MERS-CoV	NC_019843.3	-	22633	22929	296	0.200962024	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1173	MERS-CoV	NC_019843.3	-	22633	22935	302	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1174	MERS-CoV	NC_019843.3	-	22633	22973	340	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1175	MERS-CoV	NC_019843.3	-	22633	23091	458	0.747170225	11.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1176	MERS-CoV	NC_019843.3	+	22641	22887	246	9.277308761	149.3333333	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1177	MERS-CoV	NC_019843.3	+	22641	22960	319	0.793490161	14.0	S	Calu-3
vc_MERS-CoV_1178	MERS-CoV	NC_019843.3	+	22641	23031	390	0.85016803	15.0	S	Calu-3
vc_MERS-CoV_1179	MERS-CoV	NC_019843.3	+	22641	23117	476	0.85016803	15.0	S	Calu-3
vc_MERS-CoV_1180	MERS-CoV	NC_019843.3	-	22691	22916	225	1.354015495	23.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1181	MERS-CoV	NC_019843.3	-	22691	22929	238	2.040403272	36.0	NA	Calu-3
vc_MERS-CoV_1182	MERS-CoV	NC_019843.3	-	22691	22998	307	4.066306628	62.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1183	MERS-CoV	NC_019843.3	-	22727	22965	238	1.594821462	23.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1184	MERS-CoV	NC_019843.3	-	22727	22973	246	1.770034035	25.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1185	MERS-CoV	NC_019843.3	-	22727	22998	271	8.07728851	128.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1186	MERS-CoV	NC_019843.3	+	22760	23042	282	0.85016803	15.0	S	Calu-3
vc_MERS-CoV_1187	MERS-CoV	NC_019843.3	-	22764	22937	173	1.04690476	17.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1188	MERS-CoV	NC_019843.3	-	22764	22965	201	1.713345895	29.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1189	MERS-CoV	NC_019843.3	-	22764	22970	206	1.607435185	26.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1190	MERS-CoV	NC_019843.3	-	22764	22977	213	1.673581049	26.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1191	MERS-CoV	NC_019843.3	-	22764	23382	618	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1192	MERS-CoV	NC_019843.3	-	22791	22973	182	2.213171741	32.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1193	MERS-CoV	NC_019843.3	-	22791	22998	207	11.51082185	186.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1194	MERS-CoV	NC_019843.3	-	22800	22973	173	0.767799354	11.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1195	MERS-CoV	NC_019843.3	-	22800	22998	198	5.698606418	91.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1196	MERS-CoV	NC_019843.3	-	22804	22973	169	1.502884008	27.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1197	MERS-CoV	NC_019843.3	-	22804	22977	173	0.200962024	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1198	MERS-CoV	NC_019843.3	-	22804	22998	194	0.665594566	10.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1199	MERS-CoV	NC_019843.3	+	22832	23325	493	2.169368598	32.0	S	Calu-3;Calu-3
vc_MERS-CoV_1200	MERS-CoV	NC_019843.3	-	22886	23655	769	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1201	MERS-CoV	NC_019843.3	+	22900	23325	425	1.870369666	33.0	S	Calu-3
vc_MERS-CoV_1202	MERS-CoV	NC_019843.3	-	22917	23114	197	1.485486113	23.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1203	MERS-CoV	NC_019843.3	-	22917	23164	247	0.928958256	15.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1204	MERS-CoV	NC_019843.3	-	22917	23216	299	0.183504169	3.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1205	MERS-CoV	NC_019843.3	-	22917	23278	361	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1206	MERS-CoV	NC_019843.3	-	22917	23341	424	0.137405643	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1207	MERS-CoV	NC_019843.3	-	22917	23573	656	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1208	MERS-CoV	NC_019843.3	-	22917	23583	666	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1209	MERS-CoV	NC_019843.3	-	22917	23616	699	1.197589274	22.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1210	MERS-CoV	NC_019843.3	-	22917	23645	728	0.656709678	10.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1211	MERS-CoV	NC_019843.3	-	22917	23815	898	1.020201636	18.0	NA	Calu-3
vc_MERS-CoV_1212	MERS-CoV	NC_019843.3	-	22917	25238	2321	5.611108998	99.0	NA	Calu-3
vc_MERS-CoV_1213	MERS-CoV	NC_019843.3	-	22917	27231	4314	9.011781118	159.0	NA	Calu-3
vc_MERS-CoV_1214	MERS-CoV	NC_019843.3	-	22925	23583	658	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1215	MERS-CoV	NC_019843.3	-	22999	23278	279	0.216426232	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1216	MERS-CoV	NC_019843.3	-	22999	25596	2597	0.793490161	14.0	NA	Calu-3
vc_MERS-CoV_1217	MERS-CoV	NC_019843.3	+	23008	23325	317	0.165744577	3.0	S	Calu-3;Calu-3
vc_MERS-CoV_1218	MERS-CoV	NC_019843.3	-	23013	23247	234	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1219	MERS-CoV	NC_019843.3	+	23081	23325	244	0.170033606	3.0	S	Calu-3
vc_MERS-CoV_1220	MERS-CoV	NC_019843.3	-	23177	23433	256	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1221	MERS-CoV	NC_019843.3	+	23326	23620	294	4.048255482	62.66666667	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1222	MERS-CoV	NC_019843.3	+	23326	23820	494	1.190235242	21.0	S	Calu-3
vc_MERS-CoV_1223	MERS-CoV	NC_019843.3	+	23371	23718	347	0.113355737	2.0	S	Calu-3
vc_MERS-CoV_1224	MERS-CoV	NC_019843.3	-	23584	23862	278	67.88204661	1093.666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1225	MERS-CoV	NC_019843.3	-	23584	25027	1443	0.736812293	13.0	NA	Calu-3
vc_MERS-CoV_1226	MERS-CoV	NC_019843.3	-	23584	25048	1464	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1227	MERS-CoV	NC_019843.3	-	23584	26082	2498	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1228	MERS-CoV	NC_019843.3	-	23680	27821	4141	1.983725403	35.0	NA	Calu-3
vc_MERS-CoV_1229	MERS-CoV	NC_019843.3	+	23719	23864	145	0.364143893	5.666666667	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1230	MERS-CoV	NC_019843.3	+	23763	24246	483	0.566778687	10.0	S	Calu-3
vc_MERS-CoV_1231	MERS-CoV	NC_019843.3	-	23803	25243	1440	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1232	MERS-CoV	NC_019843.3	-	23917	25243	1326	0.246472351	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1233	MERS-CoV	NC_019843.3	-	23995	24261	266	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1234	MERS-CoV	NC_019843.3	-	23995	25243	1248	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1235	MERS-CoV	NC_019843.3	-	24043	25243	1200	0.28856831	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1236	MERS-CoV	NC_019843.3	-	24252	25035	783	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1237	MERS-CoV	NC_019843.3	-	24252	25048	796	5.214363918	92.0	NA	Calu-3
vc_MERS-CoV_1238	MERS-CoV	NC_019843.3	-	24252	25616	1364	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1239	MERS-CoV	NC_019843.3	-	24299	25243	944	0.62464823	10.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1240	MERS-CoV	NC_019843.3	-	24376	25035	659	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_1241	MERS-CoV	NC_019843.3	-	24413	25048	635	6.121209816	108.0	NA	Calu-3
vc_MERS-CoV_1242	MERS-CoV	NC_019843.3	-	24413	25243	830	4.068825967	64.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1243	MERS-CoV	NC_019843.3	+	24420	24698	278	1.803514888	30.33333333	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1244	MERS-CoV	NC_019843.3	+	24420	24717	297	0.187793198	3.0	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1245	MERS-CoV	NC_019843.3	+	24420	24995	575	2.040403272	36.0	S	Calu-3
vc_MERS-CoV_1246	MERS-CoV	NC_019843.3	+	24420	25067	647	0.305294734	5.5	S	Calu-3;Calu-3
vc_MERS-CoV_1247	MERS-CoV	NC_019843.3	-	24494	25121	627	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1248	MERS-CoV	NC_019843.3	-	24494	25238	744	0.163600062	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1249	MERS-CoV	NC_019843.3	-	24494	25787	1293	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1250	MERS-CoV	NC_019843.3	-	24497	25048	551	4.524330527	70.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1251	MERS-CoV	NC_019843.3	-	24497	25110	613	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1252	MERS-CoV	NC_019843.3	-	24497	25243	746	9.157096195	146.6666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1253	MERS-CoV	NC_019843.3	+	24519	24698	179	0.322911095	6.0	S	Calu-3;Calu-3
vc_MERS-CoV_1254	MERS-CoV	NC_019843.3	+	24519	24995	476	0.633528026	10.0	S	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1255	MERS-CoV	NC_019843.3	+	24519	25747	1228	0.226711475	4.0	S;orf3	Calu-3
vc_MERS-CoV_1256	MERS-CoV	NC_019843.3	+	24549	25079	530	0.283389343	5.0	S	Calu-3
vc_MERS-CoV_1257	MERS-CoV	NC_019843.3	-	24584	25048	464	0.492944701	9.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1258	MERS-CoV	NC_019843.3	-	24584	25243	659	1.034027488	16.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1259	MERS-CoV	NC_019843.3	-	24622	25048	426	0.793490161	14.0	NA	Calu-3
vc_MERS-CoV_1260	MERS-CoV	NC_019843.3	-	24622	25194	572	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1261	MERS-CoV	NC_019843.3	-	24622	25243	621	0.768932385	12.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1262	MERS-CoV	NC_019843.3	-	24643	25121	478	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1263	MERS-CoV	NC_019843.3	-	24643	29148	4505	0.240038807	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1264	MERS-CoV	NC_019843.3	-	24660	25301	641	5.611108998	99.0	NA	Calu-3
vc_MERS-CoV_1265	MERS-CoV	NC_019843.3	-	24706	25035	329	6.753485762	108.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1266	MERS-CoV	NC_019843.3	+	24826	25079	253	0.113355737	2.0	S	Calu-3
vc_MERS-CoV_1267	MERS-CoV	NC_019843.3	-	24861	25035	174	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1268	MERS-CoV	NC_019843.3	-	24861	25048	187	1.184326994	18.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1269	MERS-CoV	NC_019843.3	-	24861	25243	382	3.3479883	53.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1270	MERS-CoV	NC_019843.3	-	24861	25616	755	2.210436878	39.0	NA	Calu-3
vc_MERS-CoV_1271	MERS-CoV	NC_019843.3	-	24882	25048	166	1.895998403	30.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1272	MERS-CoV	NC_019843.3	-	24882	25194	312	0.963523767	17.0	NA	Calu-3
vc_MERS-CoV_1273	MERS-CoV	NC_019843.3	-	24894	25121	227	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_1274	MERS-CoV	NC_019843.3	+	24900	25252	352	7.992813382	147.0	S	Calu-3;Calu-3
vc_MERS-CoV_1275	MERS-CoV	NC_019843.3	+	24900	25268	368	3.453677909	64.0	S	Calu-3;Calu-3
vc_MERS-CoV_1276	MERS-CoV	NC_019843.3	+	24900	25458	558	2.169368598	32.0	S	Calu-3;Calu-3
vc_MERS-CoV_1277	MERS-CoV	NC_019843.3	-	24936	25280	344	1.70033606	30.0	NA	Calu-3
vc_MERS-CoV_1278	MERS-CoV	NC_019843.3	-	24941	25194	253	0.330647677	5.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1279	MERS-CoV	NC_019843.3	-	24941	25243	302	5.447575169	86.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1280	MERS-CoV	NC_019843.3	-	24969	25121	152	0.85016803	15.0	NA	Calu-3
vc_MERS-CoV_1281	MERS-CoV	NC_019843.3	-	24969	25243	274	1.285657121	21.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1282	MERS-CoV	NC_019843.3	-	24989	25243	254	1.275045911	21.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1283	MERS-CoV	NC_019843.3	-	24989	25257	268	3.40067212	60.0	NA	Calu-3
vc_MERS-CoV_1284	MERS-CoV	NC_019843.3	-	25016	25194	178	12.72603237	233.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1285	MERS-CoV	NC_019843.3	-	25016	25243	227	11.54121053	185.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1286	MERS-CoV	NC_019843.3	-	25036	25243	207	0.831630697	13.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1287	MERS-CoV	NC_019843.3	-	25036	25280	244	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1288	MERS-CoV	NC_019843.3	-	25036	25290	254	0.161455548	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1289	MERS-CoV	NC_019843.3	-	25036	25579	543	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1290	MERS-CoV	NC_019843.3	-	25036	25830	794	1.416946717	25.0	NA	Calu-3
vc_MERS-CoV_1291	MERS-CoV	NC_019843.3	-	25049	25238	189	0.955597644	15.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1292	MERS-CoV	NC_019843.3	-	25049	25290	241	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1293	MERS-CoV	NC_019843.3	-	25049	25399	350	0.200962024	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1294	MERS-CoV	NC_019843.3	-	25049	25575	526	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1295	MERS-CoV	NC_019843.3	-	25049	25616	567	0.89658357	16.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1296	MERS-CoV	NC_019843.3	-	25061	25243	182	3.970332192	65.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1297	MERS-CoV	NC_019843.3	-	25061	25616	555	0.329344639	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1298	MERS-CoV	NC_019843.3	-	25089	25243	154	0.466750282	8.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1299	MERS-CoV	NC_019843.3	-	25103	25616	513	0.253350863	4.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1300	MERS-CoV	NC_019843.3	-	25146	25787	641	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1301	MERS-CoV	NC_019843.3	-	25195	25555	360	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1302	MERS-CoV	NC_019843.3	-	25195	25577	382	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1303	MERS-CoV	NC_019843.3	-	25195	25589	394	0.74402441	12.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1304	MERS-CoV	NC_019843.3	-	25195	25616	421	1.928428267	35.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1305	MERS-CoV	NC_019843.3	-	25195	25739	544	2.022824703	32.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1306	MERS-CoV	NC_019843.3	-	25195	25787	592	1.813691797	32.0	NA	Calu-3
vc_MERS-CoV_1307	MERS-CoV	NC_019843.3	-	25195	25813	618	0.484366643	9.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1308	MERS-CoV	NC_019843.3	-	25195	27821	2626	0.680134424	12.0	NA	Calu-3
vc_MERS-CoV_1309	MERS-CoV	NC_019843.3	-	25226	25616	390	0.352404744	5.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1310	MERS-CoV	NC_019843.3	-	25229	25616	387	0.405926614	7.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1311	MERS-CoV	NC_019843.3	-	25234	25616	382	0.462461252	8.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1312	MERS-CoV	NC_019843.3	-	25244	25575	331	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1313	MERS-CoV	NC_019843.3	-	25244	25616	372	1.902563677	31.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1314	MERS-CoV	NC_019843.3	-	25244	25909	665	1.840806706	33.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1315	MERS-CoV	NC_019843.3	-	25244	26256	1012	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1316	MERS-CoV	NC_019843.3	-	25248	25577	329	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1317	MERS-CoV	NC_019843.3	-	25248	25616	368	0.137405643	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1318	MERS-CoV	NC_019843.3	-	25296	25616	320	0.221289415	3.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1319	MERS-CoV	NC_019843.3	-	25302	25557	255	0.257639892	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1320	MERS-CoV	NC_019843.3	-	25302	25685	383	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1321	MERS-CoV	NC_019843.3	-	25302	25830	528	1.396448922	20.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1322	MERS-CoV	NC_019843.3	-	25302	25912	610	24.97842066	458.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1323	MERS-CoV	NC_019843.3	-	25302	25927	625	2.437148353	43.0	NA	Calu-3
vc_MERS-CoV_1324	MERS-CoV	NC_019843.3	-	25325	25616	291	0.222719091	3.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1325	MERS-CoV	NC_019843.3	-	25332	25616	284	0.355539059	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1326	MERS-CoV	NC_019843.3	-	25350	25616	266	2.610815626	41.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1327	MERS-CoV	NC_019843.3	-	25408	25616	208	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1328	MERS-CoV	NC_019843.3	-	25434	26847	1413	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1329	MERS-CoV	NC_019843.3	-	25476	25616	140	0.516994606	9.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1330	MERS-CoV	NC_019843.3	-	25485	25787	302	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1331	MERS-CoV	NC_019843.3	-	25485	25813	328	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1332	MERS-CoV	NC_019843.3	-	25485	25893	408	1.212104505	18.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1333	MERS-CoV	NC_019843.3	-	25485	25951	466	0.793490161	14.0	NA	Calu-3
vc_MERS-CoV_1334	MERS-CoV	NC_019843.3	-	25485	29210	3725	7.25476719	128.0	NA	Calu-3
vc_MERS-CoV_1335	MERS-CoV	NC_019843.3	+	25503	25798	295	3.036711709	56.0	S;orf3	Calu-3;Calu-3
vc_MERS-CoV_1336	MERS-CoV	NC_019843.3	+	25503	25822	319	2.301638555	38.33333333	S;orf3	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1337	MERS-CoV	NC_019843.3	+	25503	25889	386	0.906845899	16.0	S;orf3;orf4a	Calu-3
vc_MERS-CoV_1338	MERS-CoV	NC_019843.3	+	25503	25904	401	0.510100818	9.0	S;orf3;orf4a	Calu-3
vc_MERS-CoV_1339	MERS-CoV	NC_019843.3	+	25503	25915	412	4.873229385	89.5	S;orf3;orf4a	Calu-3;Calu-3
vc_MERS-CoV_1340	MERS-CoV	NC_019843.3	+	25503	25919	416	4.770596221	87.5	S;orf3;orf4a	Calu-3;Calu-3
vc_MERS-CoV_1341	MERS-CoV	NC_019843.3	-	25523	25759	236	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1342	MERS-CoV	NC_019843.3	-	25523	25893	370	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1343	MERS-CoV	NC_019843.3	-	25523	25951	428	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1344	MERS-CoV	NC_019843.3	+	25539	25798	259	0.165744577	3.0	orf3	Calu-3;Calu-3
vc_MERS-CoV_1345	MERS-CoV	NC_019843.3	-	25548	25893	345	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1346	MERS-CoV	NC_019843.3	-	25548	25927	379	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1347	MERS-CoV	NC_019843.3	-	25551	25787	236	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1348	MERS-CoV	NC_019843.3	+	25566	25919	353	2.323792615	41.0	orf3;orf4a	Calu-3
vc_MERS-CoV_1349	MERS-CoV	NC_019843.3	-	25591	25927	336	4.874296706	86.0	NA	Calu-3
vc_MERS-CoV_1350	MERS-CoV	NC_019843.3	-	25605	25909	304	0.82102967	13.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1351	MERS-CoV	NC_019843.3	-	25605	25927	322	0.650990972	10.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1352	MERS-CoV	NC_019843.3	-	25605	26000	395	0.322911095	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1353	MERS-CoV	NC_019843.3	-	25617	25849	232	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1354	MERS-CoV	NC_019843.3	-	25617	25898	281	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1355	MERS-CoV	NC_019843.3	-	25617	25909	292	0.569696683	8.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1356	MERS-CoV	NC_019843.3	-	25617	25927	310	0.504994542	7.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1357	MERS-CoV	NC_019843.3	-	25617	26000	383	0.298289583	5.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1358	MERS-CoV	NC_019843.3	-	25617	26735	1118	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1359	MERS-CoV	NC_019843.3	-	25684	25893	209	0.168900575	2.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1360	MERS-CoV	NC_019843.3	-	25699	25951	252	0.793490161	14.0	NA	Calu-3
vc_MERS-CoV_1361	MERS-CoV	NC_019843.3	+	25728	26008	280	0.566778687	10.0	orf3;orf4a	Calu-3
vc_MERS-CoV_1362	MERS-CoV	NC_019843.3	-	25741	25951	210	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1363	MERS-CoV	NC_019843.3	-	25741	26847	1106	2.040403272	36.0	NA	Calu-3
vc_MERS-CoV_1364	MERS-CoV	NC_019843.3	-	25771	25975	204	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1365	MERS-CoV	NC_019843.3	-	25771	26517	746	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1366	MERS-CoV	NC_019843.3	-	25777	26855	1078	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1367	MERS-CoV	NC_019843.3	-	25797	26000	203	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1368	MERS-CoV	NC_019843.3	-	25832	26041	209	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1369	MERS-CoV	NC_019843.3	-	25861	28732	2871	4.930974574	87.0	NA	Calu-3
vc_MERS-CoV_1370	MERS-CoV	NC_019843.3	-	25894	26041	147	0.900597637	15.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1371	MERS-CoV	NC_019843.3	-	25894	26074	180	2.408418834	38.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1372	MERS-CoV	NC_019843.3	-	25894	26171	277	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1373	MERS-CoV	NC_019843.3	-	25894	26212	318	0.163600062	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1374	MERS-CoV	NC_019843.3	-	25894	26230	336	0.440555862	8.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1375	MERS-CoV	NC_019843.3	-	25894	26256	362	0.200962024	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1376	MERS-CoV	NC_019843.3	-	25894	26342	448	2.303942893	36.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1377	MERS-CoV	NC_019843.3	-	25894	26380	486	0.793490161	14.0	NA	Calu-3
vc_MERS-CoV_1378	MERS-CoV	NC_019843.3	-	25894	26384	490	12.1056747	196.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1379	MERS-CoV	NC_019843.3	-	25894	26439	545	2.362308807	39.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1380	MERS-CoV	NC_019843.3	-	25894	26494	600	0.357683573	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1381	MERS-CoV	NC_019843.3	-	25894	26517	623	9.889534171	183.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1382	MERS-CoV	NC_019843.3	-	25894	26646	752	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1383	MERS-CoV	NC_019843.3	-	25894	26711	817	3.239373279	59.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1384	MERS-CoV	NC_019843.3	-	25894	26843	949	10.28470195	166.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1385	MERS-CoV	NC_019843.3	-	25894	26855	961	11.16218146	205.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1386	MERS-CoV	NC_019843.3	-	25894	26891	997	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1387	MERS-CoV	NC_019843.3	-	25894	27231	1337	13.24302697	243.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1388	MERS-CoV	NC_019843.3	-	25894	27254	1360	4.7042631	83.0	NA	Calu-3
vc_MERS-CoV_1389	MERS-CoV	NC_019843.3	-	25894	28732	2838	1.829301386	26.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1390	MERS-CoV	NC_019843.3	-	25904	26891	987	0.379588964	7.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1391	MERS-CoV	NC_019843.3	-	25911	26517	606	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_1392	MERS-CoV	NC_019843.3	-	25914	26212	298	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1393	MERS-CoV	NC_019843.3	-	25952	26215	263	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1394	MERS-CoV	NC_019843.3	-	25952	26230	278	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1395	MERS-CoV	NC_019843.3	-	25952	26256	304	0.172623089	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1396	MERS-CoV	NC_019843.3	-	25952	26384	432	89.77459624	1447.666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1397	MERS-CoV	NC_019843.3	-	25952	26439	487	4.817618837	85.0	NA	Calu-3
vc_MERS-CoV_1398	MERS-CoV	NC_019843.3	-	25952	26517	565	1.643658191	29.0	NA	Calu-3
vc_MERS-CoV_1399	MERS-CoV	NC_019843.3	-	25952	26630	678	3.287316383	58.0	NA	Calu-3
vc_MERS-CoV_1400	MERS-CoV	NC_019843.3	-	25952	26711	759	2.55050409	45.0	NA	Calu-3
vc_MERS-CoV_1401	MERS-CoV	NC_019843.3	-	25952	27633	1681	8.274968826	146.0	NA	Calu-3
vc_MERS-CoV_1402	MERS-CoV	NC_019843.3	-	26016	26626	610	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1403	MERS-CoV	NC_019843.3	-	26037	26395	358	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1404	MERS-CoV	NC_019843.3	-	26087	26380	293	1.360268848	24.0	NA	Calu-3
vc_MERS-CoV_1405	MERS-CoV	NC_019843.3	-	26125	26342	217	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1406	MERS-CoV	NC_019843.3	-	26125	26378	253	2.284165425	37.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1407	MERS-CoV	NC_019843.3	-	26125	26380	255	0.462901129	7.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1408	MERS-CoV	NC_019843.3	-	26125	26389	264	1.870369666	33.0	NA	Calu-3
vc_MERS-CoV_1409	MERS-CoV	NC_019843.3	-	26125	26399	274	0.687643187	10.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1410	MERS-CoV	NC_019843.3	-	26125	26439	314	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1411	MERS-CoV	NC_019843.3	-	26125	26517	392	0.703083166	11.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1412	MERS-CoV	NC_019843.3	-	26125	26837	712	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1413	MERS-CoV	NC_019843.3	-	26125	26855	730	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1414	MERS-CoV	NC_019843.3	+	26139	26884	745	0.52342815	9.5	orf4a;orf4b;orf5	Calu-3;Calu-3
vc_MERS-CoV_1415	MERS-CoV	NC_019843.3	+	26139	28693	2554	0.340067212	6.0	orf4a;orf4b;orf5;E;M;N	Calu-3
vc_MERS-CoV_1416	MERS-CoV	NC_019843.3	-	26179	26482	303	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1417	MERS-CoV	NC_019843.3	-	26187	26891	704	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1418	MERS-CoV	NC_019843.3	-	26195	26395	200	0.755763559	12.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1419	MERS-CoV	NC_019843.3	-	26195	26517	322	5.71993998	75.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1420	MERS-CoV	NC_019843.3	-	26231	26378	147	2.068896453	33.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1421	MERS-CoV	NC_019843.3	-	26231	26380	149	0.640973054	9.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1422	MERS-CoV	NC_019843.3	-	26231	26384	153	0.675898947	10.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1423	MERS-CoV	NC_019843.3	-	26231	26395	164	0.767502708	12.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1424	MERS-CoV	NC_019843.3	-	26231	26399	168	1.356092014	21.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1425	MERS-CoV	NC_019843.3	-	26231	26439	208	1.217531657	19.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1426	MERS-CoV	NC_019843.3	-	26231	26464	233	0.205256144	3.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1427	MERS-CoV	NC_019843.3	-	26231	26478	247	0.590018983	9.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1428	MERS-CoV	NC_019843.3	-	26231	26482	251	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1429	MERS-CoV	NC_019843.3	-	26231	26494	263	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1430	MERS-CoV	NC_019843.3	-	26231	26520	289	0.165744577	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1431	MERS-CoV	NC_019843.3	-	26231	26525	294	3.729891785	59.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1432	MERS-CoV	NC_019843.3	-	26231	26546	315	0.696226338	11.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1433	MERS-CoV	NC_019843.3	-	26231	26648	417	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1434	MERS-CoV	NC_019843.3	-	26231	26703	472	0.592586782	9.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1435	MERS-CoV	NC_019843.3	-	26231	26711	480	0.80874569	12.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1436	MERS-CoV	NC_019843.3	-	26231	26738	507	1.081285821	16.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1437	MERS-CoV	NC_019843.3	-	26231	26801	570	1.908667391	35.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1438	MERS-CoV	NC_019843.3	-	26231	26843	612	5.214980867	95.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1439	MERS-CoV	NC_019843.3	-	26231	26847	616	1.071812734	17.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1440	MERS-CoV	NC_019843.3	-	26231	26855	624	11.75181482	189.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1441	MERS-CoV	NC_019843.3	-	26231	26891	660	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1442	MERS-CoV	NC_019843.3	-	26231	26919	688	0.244327836	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1443	MERS-CoV	NC_019843.3	-	26231	27058	827	1.530302454	27.0	NA	Calu-3
vc_MERS-CoV_1444	MERS-CoV	NC_019843.3	-	26231	27231	1000	9.181814724	162.0	NA	Calu-3
vc_MERS-CoV_1445	MERS-CoV	NC_019843.3	-	26231	27821	1590	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_1446	MERS-CoV	NC_019843.3	-	26250	26395	145	12.52580898	221.0	NA	Calu-3
vc_MERS-CoV_1447	MERS-CoV	NC_019843.3	-	26250	26439	189	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1448	MERS-CoV	NC_019843.3	-	26272	26573	301	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1449	MERS-CoV	NC_019843.3	-	26272	26855	583	1.133557373	20.0	NA	Calu-3
vc_MERS-CoV_1450	MERS-CoV	NC_019843.3	-	26343	26517	174	4.216562766	66.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1451	MERS-CoV	NC_019843.3	-	26343	26520	177	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1452	MERS-CoV	NC_019843.3	-	26343	26573	230	0.23445824	3.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1453	MERS-CoV	NC_019843.3	-	26343	26611	268	0.218721616	3.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1454	MERS-CoV	NC_019843.3	-	26343	26675	332	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1455	MERS-CoV	NC_019843.3	-	26343	26703	360	0.726549964	13.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1456	MERS-CoV	NC_019843.3	-	26343	26711	368	0.745750732	11.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1457	MERS-CoV	NC_019843.3	-	26343	26757	414	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1458	MERS-CoV	NC_019843.3	-	26343	26855	512	2.983256207	48.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1459	MERS-CoV	NC_019843.3	-	26343	26891	548	0.244327836	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1460	MERS-CoV	NC_019843.3	-	26343	27091	748	2.174900618	40.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1461	MERS-CoV	NC_019843.3	-	26343	28530	2187	2.55050409	45.0	NA	Calu-3
vc_MERS-CoV_1462	MERS-CoV	NC_019843.3	-	26343	29649	3306	1.133557373	20.0	NA	Calu-3
vc_MERS-CoV_1463	MERS-CoV	NC_019843.3	-	26343	30069	3726	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1464	MERS-CoV	NC_019843.3	-	26358	27051	693	1.643658191	29.0	NA	Calu-3
vc_MERS-CoV_1465	MERS-CoV	NC_019843.3	-	26401	26847	446	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1466	MERS-CoV	NC_019843.3	+	26421	26884	463	0.680134424	12.0	orf4b;orf5	Calu-3
vc_MERS-CoV_1467	MERS-CoV	NC_019843.3	+	26516	27066	550	0.226711475	4.0	orf4b;orf5	Calu-3
vc_MERS-CoV_1468	MERS-CoV	NC_019843.3	-	26522	26847	325	5.157686049	91.0	NA	Calu-3
vc_MERS-CoV_1469	MERS-CoV	NC_019843.3	-	26566	26847	281	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1470	MERS-CoV	NC_019843.3	-	26618	26801	183	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1471	MERS-CoV	NC_019843.3	-	26618	27064	446	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1472	MERS-CoV	NC_019843.3	-	26637	26847	210	1.360268848	24.0	NA	Calu-3
vc_MERS-CoV_1473	MERS-CoV	NC_019843.3	-	26664	26847	183	0.831037405	13.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1474	MERS-CoV	NC_019843.3	-	26664	26855	191	0.191938997	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1475	MERS-CoV	NC_019843.3	-	26664	26888	224	0.131115329	2.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1476	MERS-CoV	NC_019843.3	-	26664	26891	227	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1477	MERS-CoV	NC_019843.3	-	26664	27183	519	0.161455548	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1478	MERS-CoV	NC_019843.3	-	26664	27187	523	0.352108098	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1479	MERS-CoV	NC_019843.3	-	26677	26847	170	4.871264751	78.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1480	MERS-CoV	NC_019843.3	-	26677	26855	178	2.572743918	42.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1481	MERS-CoV	NC_019843.3	-	26677	26888	211	6.584045447	104.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1482	MERS-CoV	NC_019843.3	-	26677	26912	235	0.680134424	12.0	NA	Calu-3
vc_MERS-CoV_1483	MERS-CoV	NC_019843.3	-	26677	27183	506	1.893675014	28.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1484	MERS-CoV	NC_019843.3	-	26687	27187	500	4.647585231	82.0	NA	Calu-3
vc_MERS-CoV_1485	MERS-CoV	NC_019843.3	-	26695	26847	152	1.223825833	17.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1486	MERS-CoV	NC_019843.3	-	26695	26942	247	1.70033606	30.0	NA	Calu-3
vc_MERS-CoV_1487	MERS-CoV	NC_019843.3	-	26717	27187	470	0.963523767	17.0	NA	Calu-3
vc_MERS-CoV_1488	MERS-CoV	NC_019843.3	-	26817	27183	366	1.076879505	19.0	NA	Calu-3
vc_MERS-CoV_1489	MERS-CoV	NC_019843.3	+	26826	27020	194	0.113355737	2.0	orf4b;orf5	Calu-3
vc_MERS-CoV_1490	MERS-CoV	NC_019843.3	+	26826	27061	235	0.214135941	3.333333333	orf4b;orf5	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1491	MERS-CoV	NC_019843.3	+	26826	27066	240	0.466750282	8.5	orf4b;orf5	Calu-3;Calu-3
vc_MERS-CoV_1492	MERS-CoV	NC_019843.3	+	26826	27088	262	2.870780223	45.0	orf4b;orf5	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1493	MERS-CoV	NC_019843.3	+	26826	27166	340	4.014137881	66.0	orf4b;orf5	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1494	MERS-CoV	NC_019843.3	+	26826	27185	359	0.383036516	6.0	orf4b;orf5	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1495	MERS-CoV	NC_019843.3	+	26826	27451	625	0.566778687	10.0	orf4b;orf5	Calu-3
vc_MERS-CoV_1496	MERS-CoV	NC_019843.3	+	26826	28005	1179	1.133557373	20.0	orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_1497	MERS-CoV	NC_019843.3	-	26835	27051	216	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_1498	MERS-CoV	NC_019843.3	-	26839	27254	415	2.380470484	42.0	NA	Calu-3
vc_MERS-CoV_1499	MERS-CoV	NC_019843.3	-	26868	27049	181	10.41325967	168.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1500	MERS-CoV	NC_019843.3	-	26868	27127	259	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1501	MERS-CoV	NC_019843.3	-	26868	27254	386	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1502	MERS-CoV	NC_019843.3	+	26886	27241	355	4.221989917	66.66666667	orf5	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1503	MERS-CoV	NC_019843.3	+	26886	27263	377	0.566778687	10.0	orf5	Calu-3
vc_MERS-CoV_1504	MERS-CoV	NC_019843.3	+	27175	29022	1847	0.113355737	2.0	orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1505	MERS-CoV	NC_019843.3	-	27213	28740	1527	16.0965147	284.0	NA	Calu-3
vc_MERS-CoV_1506	MERS-CoV	NC_019843.3	-	27233	27845	612	2.093804428	33.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1507	MERS-CoV	NC_019843.3	+	27252	28001	749	0.113355737	2.0	orf5;E;M	Calu-3
vc_MERS-CoV_1508	MERS-CoV	NC_019843.3	-	27308	27845	537	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1509	MERS-CoV	NC_019843.3	-	27358	27669	311	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1510	MERS-CoV	NC_019843.3	-	27419	27845	426	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1511	MERS-CoV	NC_019843.3	-	27530	27814	284	0.135261128	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1512	MERS-CoV	NC_019843.3	-	27589	27845	256	2.731416975	50.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1513	MERS-CoV	NC_019843.3	-	27589	27856	267	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_1514	MERS-CoV	NC_019843.3	-	27597	27821	224	0.64582219	12.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1515	MERS-CoV	NC_019843.3	-	27635	27845	210	0.805298138	13.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1516	MERS-CoV	NC_019843.3	-	27649	28732	1083	4.080806544	72.0	NA	Calu-3
vc_MERS-CoV_1517	MERS-CoV	NC_019843.3	-	27819	28165	346	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1518	MERS-CoV	NC_019843.3	-	27913	28088	175	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1519	MERS-CoV	NC_019843.3	+	28103	29602	1499	0.113355737	2.0	M;N;orf8b	Calu-3
vc_MERS-CoV_1520	MERS-CoV	NC_019843.3	-	28135	28732	597	1.34721731	21.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1521	MERS-CoV	NC_019843.3	-	28241	28732	491	1.450263575	23.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1522	MERS-CoV	NC_019843.3	-	28284	28732	448	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1523	MERS-CoV	NC_019843.3	-	28284	29148	864	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1524	MERS-CoV	NC_019843.3	-	28294	28755	461	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1525	MERS-CoV	NC_019843.3	+	28454	29724	1270	0.510100818	9.0	M;N;orf8b	Calu-3
vc_MERS-CoV_1526	MERS-CoV	NC_019843.3	-	28462	28732	270	2.398411099	38.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1527	MERS-CoV	NC_019843.3	+	28467	29196	729	0.283389343	5.0	M;N;orf8b	Calu-3
vc_MERS-CoV_1528	MERS-CoV	NC_019843.3	-	28547	28689	142	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1529	MERS-CoV	NC_019843.3	-	28547	28732	185	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1530	MERS-CoV	NC_019843.3	-	28585	28727	142	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1531	MERS-CoV	NC_019843.3	-	28585	28755	170	0.489243871	8.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1532	MERS-CoV	NC_019843.3	-	28585	28878	293	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1533	MERS-CoV	NC_019843.3	-	28585	28895	310	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1534	MERS-CoV	NC_019843.3	-	28585	29034	449	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1535	MERS-CoV	NC_019843.3	-	28585	29107	522	1.19115573	22.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1536	MERS-CoV	NC_019843.3	-	28585	29146	561	2.259917421	41.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1537	MERS-CoV	NC_019843.3	-	28585	29148	563	1.540261245	28.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1538	MERS-CoV	NC_019843.3	-	28585	29160	575	0.421959884	7.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1539	MERS-CoV	NC_019843.3	-	28628	29210	582	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1540	MERS-CoV	NC_019843.3	-	28632	28770	138	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1541	MERS-CoV	NC_019843.3	-	28632	28872	240	0.279100314	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1542	MERS-CoV	NC_019843.3	-	28632	28878	246	0.620359201	10.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1543	MERS-CoV	NC_019843.3	-	28632	28956	324	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1544	MERS-CoV	NC_019843.3	-	28632	28959	327	0.137405643	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1545	MERS-CoV	NC_019843.3	-	28632	28965	333	0.955004352	15.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1546	MERS-CoV	NC_019843.3	-	28632	28983	351	0.305294734	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1547	MERS-CoV	NC_019843.3	-	28632	29030	398	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1548	MERS-CoV	NC_019843.3	-	28632	29034	402	0.358120904	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1549	MERS-CoV	NC_019843.3	-	28632	29041	409	0.359849772	5.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1550	MERS-CoV	NC_019843.3	-	28632	29079	447	0.71023664	12.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1551	MERS-CoV	NC_019843.3	-	28632	29091	459	0.76637477	12.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1552	MERS-CoV	NC_019843.3	-	28632	29107	475	0.200962024	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1553	MERS-CoV	NC_019843.3	-	28632	29109	477	0.955300999	15.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1554	MERS-CoV	NC_019843.3	-	28632	29118	486	0.412243703	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1555	MERS-CoV	NC_019843.3	-	28632	29146	514	0.492944701	9.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1556	MERS-CoV	NC_019843.3	-	28632	29148	516	1.133621109	19.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1557	MERS-CoV	NC_019843.3	-	28632	29160	528	0.6209474	9.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1558	MERS-CoV	NC_019843.3	-	28632	29201	569	0.449732303	7.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1559	MERS-CoV	NC_019843.3	-	28632	29204	572	0.404793584	6.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1560	MERS-CoV	NC_019843.3	-	28632	29216	584	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1561	MERS-CoV	NC_019843.3	-	28632	29237	605	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1562	MERS-CoV	NC_019843.3	-	28632	29280	648	0.981643741	15.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1563	MERS-CoV	NC_019843.3	-	28632	29358	726	0.401929139	6.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1564	MERS-CoV	NC_019843.3	-	28632	29405	773	0.241611714	4.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1565	MERS-CoV	NC_019843.3	-	28632	29466	834	0.224445413	3.333333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1566	MERS-CoV	NC_019843.3	-	28632	29573	941	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1567	MERS-CoV	NC_019843.3	+	28642	29252	610	0.623456555	11.0	N;orf8b	Calu-3
vc_MERS-CoV_1568	MERS-CoV	NC_019843.3	-	28675	29041	366	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1569	MERS-CoV	NC_019843.3	-	28675	29160	485	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1570	MERS-CoV	NC_019843.3	-	28675	29405	730	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1571	MERS-CoV	NC_019843.3	-	28675	29549	874	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1572	MERS-CoV	NC_019843.3	-	28683	30090	1407	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1573	MERS-CoV	NC_019843.3	-	28714	29148	434	0.253647509	3.666666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1574	MERS-CoV	NC_019843.3	-	28716	29210	494	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1575	MERS-CoV	NC_019843.3	-	28733	28959	226	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1576	MERS-CoV	NC_019843.3	-	28733	28965	232	0.685916865	11.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1577	MERS-CoV	NC_019843.3	-	28733	29030	297	1.723161939	31.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1578	MERS-CoV	NC_019843.3	-	28733	29034	301	0.165744577	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1579	MERS-CoV	NC_019843.3	-	28733	29041	308	0.909224156	13.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1580	MERS-CoV	NC_019843.3	-	28733	29079	346	3.431312275	63.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1581	MERS-CoV	NC_019843.3	-	28733	29091	358	0.216426232	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1582	MERS-CoV	NC_019843.3	-	28733	29095	362	12.32499826	226.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1583	MERS-CoV	NC_019843.3	-	28733	29109	376	1.022838263	18.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1584	MERS-CoV	NC_019843.3	-	28733	29118	385	0.244327836	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1585	MERS-CoV	NC_019843.3	-	28733	29146	413	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_1586	MERS-CoV	NC_019843.3	-	28733	29148	415	0.89975616	14.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1587	MERS-CoV	NC_019843.3	-	28733	29160	427	6.089049686	99.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1588	MERS-CoV	NC_019843.3	-	28733	29175	442	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1589	MERS-CoV	NC_019843.3	-	28733	29201	468	0.541044511	10.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1590	MERS-CoV	NC_019843.3	-	28733	29204	471	3.422430853	54.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1591	MERS-CoV	NC_019843.3	-	28733	29216	483	0.314317761	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1592	MERS-CoV	NC_019843.3	-	28733	29237	504	1.246913111	22.0	NA	Calu-3
vc_MERS-CoV_1593	MERS-CoV	NC_019843.3	-	28733	29358	625	0.248616865	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1594	MERS-CoV	NC_019843.3	-	28733	29405	672	0.38160684	6.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1595	MERS-CoV	NC_019843.3	-	28733	29879	1146	11.57010936	212.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1596	MERS-CoV	NC_019843.3	-	28733	29952	1219	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1597	MERS-CoV	NC_019843.3	-	28741	29148	407	2.991008065	48.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1598	MERS-CoV	NC_019843.3	-	28741	29160	419	0.458601916	7.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1599	MERS-CoV	NC_019843.3	-	28756	29079	323	0.246472351	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1600	MERS-CoV	NC_019843.3	-	28756	29089	333	4.348802783	51.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1601	MERS-CoV	NC_019843.3	-	28756	29091	335	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1602	MERS-CoV	NC_019843.3	-	28756	29095	339	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1603	MERS-CoV	NC_019843.3	-	28756	29109	353	0.44572719	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1604	MERS-CoV	NC_019843.3	-	28756	29148	392	0.689914341	11.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1605	MERS-CoV	NC_019843.3	-	28756	29160	404	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1606	MERS-CoV	NC_019843.3	-	28756	29237	481	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1607	MERS-CoV	NC_019843.3	-	28756	29280	524	1.473624585	26.0	NA	Calu-3
vc_MERS-CoV_1608	MERS-CoV	NC_019843.3	-	28756	29405	649	0.736812293	13.0	NA	Calu-3
vc_MERS-CoV_1609	MERS-CoV	NC_019843.3	-	28756	29649	893	15.98315896	282.0	NA	Calu-3
vc_MERS-CoV_1610	MERS-CoV	NC_019843.3	-	28756	29877	1121	142.1293407	2283.666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1611	MERS-CoV	NC_019843.3	-	28807	29148	341	0.32505561	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1612	MERS-CoV	NC_019843.3	-	28807	29163	356	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1613	MERS-CoV	NC_019843.3	-	28812	29405	593	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1614	MERS-CoV	NC_019843.3	-	28826	29109	283	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1615	MERS-CoV	NC_019843.3	-	28826	29163	337	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1616	MERS-CoV	NC_019843.3	+	28842	29130	288	0.464605767	8.5	N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_1617	MERS-CoV	NC_019843.3	+	28842	29921	1079	2.223456984	33.5	N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_1618	MERS-CoV	NC_019843.3	-	28846	29148	302	0.556231212	9.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1619	MERS-CoV	NC_019843.3	-	28846	29210	364	0.170033606	3.0	NA	Calu-3
vc_MERS-CoV_1620	MERS-CoV	NC_019843.3	+	28856	29003	147	0.163600062	3.0	N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_1621	MERS-CoV	NC_019843.3	+	28856	29130	274	0.525599441	8.666666667	N;orf8b	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1622	MERS-CoV	NC_019843.3	+	28856	29169	313	0.438581354	6.666666667	N;orf8b	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1623	MERS-CoV	NC_019843.3	+	28856	29252	396	0.113355737	2.0	N;orf8b	Calu-3
vc_MERS-CoV_1624	MERS-CoV	NC_019843.3	+	28856	29273	417	0.135261128	2.5	N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_1625	MERS-CoV	NC_019843.3	+	28856	29542	686	1.577386521	25.0	N;orf8b	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1626	MERS-CoV	NC_019843.3	-	28863	29160	297	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1627	MERS-CoV	NC_019843.3	-	28863	29280	417	0.623456555	11.0	NA	Calu-3
vc_MERS-CoV_1628	MERS-CoV	NC_019843.3	-	28869	29109	240	0.340067212	6.0	NA	Calu-3
vc_MERS-CoV_1629	MERS-CoV	NC_019843.3	-	28869	29210	341	1.112462425	18.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1630	MERS-CoV	NC_019843.3	-	28872	29148	276	0.137405643	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1631	MERS-CoV	NC_019843.3	-	28872	29210	338	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1632	MERS-CoV	NC_019843.3	-	28885	29148	263	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1633	MERS-CoV	NC_019843.3	+	28894	29554	660	0.170033606	3.0	N;orf8b	Calu-3
vc_MERS-CoV_1634	MERS-CoV	NC_019843.3	-	28897	29148	251	6.83643013	125.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1635	MERS-CoV	NC_019843.3	+	28917	29962	1045	0.396745081	7.0	N;orf8b	Calu-3
vc_MERS-CoV_1636	MERS-CoV	NC_019843.3	-	28967	29210	243	0.963523767	17.0	NA	Calu-3
vc_MERS-CoV_1637	MERS-CoV	NC_019843.3	-	28976	29148	172	0.777520627	12.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1638	MERS-CoV	NC_019843.3	-	28983	29148	165	2.563329475	41.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1639	MERS-CoV	NC_019843.3	+	28999	29169	170	14.74943623	272.0	N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_1640	MERS-CoV	NC_019843.3	+	28999	29554	555	0.793490161	14.0	N;orf8b	Calu-3
vc_MERS-CoV_1641	MERS-CoV	NC_019843.3	+	28999	29778	779	0.113355737	2.0	N;orf8b	Calu-3
vc_MERS-CoV_1642	MERS-CoV	NC_019843.3	-	29009	29163	154	0.27266677	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1643	MERS-CoV	NC_019843.3	-	29009	29175	166	4.261759855	69.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1644	MERS-CoV	NC_019843.3	-	29009	29210	201	4.161281389	68.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1645	MERS-CoV	NC_019843.3	-	29011	29163	152	0.906845899	16.0	NA	Calu-3
vc_MERS-CoV_1646	MERS-CoV	NC_019843.3	-	29011	29210	199	0.396745081	7.0	NA	Calu-3
vc_MERS-CoV_1647	MERS-CoV	NC_019843.3	-	29027	29210	183	0.615773526	10.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1648	MERS-CoV	NC_019843.3	-	29049	29210	161	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1649	MERS-CoV	NC_019843.3	+	29102	29921	819	7.25534871	104.0	N	Calu-3;Calu-3
vc_MERS-CoV_1650	MERS-CoV	NC_019843.3	+	29131	29340	209	0.553911599	10.0	N	Calu-3;Calu-3
vc_MERS-CoV_1651	MERS-CoV	NC_019843.3	+	29131	29475	344	0.113355737	2.0	N	Calu-3
vc_MERS-CoV_1652	MERS-CoV	NC_019843.3	+	29131	29540	409	0.453422949	8.0	N	Calu-3
vc_MERS-CoV_1653	MERS-CoV	NC_019843.3	+	29131	29542	411	1.118186222	18.33333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1654	MERS-CoV	NC_019843.3	+	29131	29559	428	0.113355737	2.0	N	Calu-3
vc_MERS-CoV_1655	MERS-CoV	NC_019843.3	+	29131	29602	471	0.170033606	3.0	N	Calu-3
vc_MERS-CoV_1656	MERS-CoV	NC_019843.3	+	29131	29605	474	3.06030137	56.0	N	Calu-3;Calu-3
vc_MERS-CoV_1657	MERS-CoV	NC_019843.3	+	29131	29842	711	0.906845899	16.0	N	Calu-3
vc_MERS-CoV_1658	MERS-CoV	NC_019843.3	+	29131	29844	713	11.09953029	204.5	N	Calu-3;Calu-3
vc_MERS-CoV_1659	MERS-CoV	NC_019843.3	+	29131	29902	771	0.340067212	6.0	N	Calu-3
vc_MERS-CoV_1660	MERS-CoV	NC_019843.3	+	29131	29911	780	5.032710115	80.33333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1661	MERS-CoV	NC_019843.3	+	29131	29921	790	0.730262294	12.66666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1662	MERS-CoV	NC_019843.3	+	29143	29400	257	0.113355737	2.0	N	Calu-3
vc_MERS-CoV_1663	MERS-CoV	NC_019843.3	+	29170	29351	181	0.148578276	2.333333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1664	MERS-CoV	NC_019843.3	+	29170	29540	370	0.216426232	3.0	N	Calu-3;Calu-3
vc_MERS-CoV_1665	MERS-CoV	NC_019843.3	+	29170	29542	372	0.972763945	15.66666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1666	MERS-CoV	NC_019843.3	+	29170	29602	432	0.373023689	5.666666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1667	MERS-CoV	NC_019843.3	+	29170	29605	435	0.135261128	2.5	N	Calu-3;Calu-3
vc_MERS-CoV_1668	MERS-CoV	NC_019843.3	+	29170	29701	531	0.328926446	5.666666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1669	MERS-CoV	NC_019843.3	+	29170	29792	622	0.170033606	3.0	N	Calu-3
vc_MERS-CoV_1670	MERS-CoV	NC_019843.3	+	29170	29806	636	0.215988902	4.0	N	Calu-3;Calu-3
vc_MERS-CoV_1671	MERS-CoV	NC_019843.3	+	29170	29818	648	0.340067212	6.0	N	Calu-3
vc_MERS-CoV_1672	MERS-CoV	NC_019843.3	+	29170	29842	672	0.57152796	10.5	N	Calu-3;Calu-3
vc_MERS-CoV_1673	MERS-CoV	NC_019843.3	+	29170	29962	792	8.02308942	117.0	N	Calu-3;Calu-3
vc_MERS-CoV_1674	MERS-CoV	NC_019843.3	+	29197	29475	278	2.655209514	41.33333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1675	MERS-CoV	NC_019843.3	+	29197	29491	294	0.226711475	4.0	N	Calu-3
vc_MERS-CoV_1676	MERS-CoV	NC_019843.3	+	29197	29540	343	3.066859926	48.66666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1677	MERS-CoV	NC_019843.3	+	29197	29542	345	11.9070451	188.0	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1678	MERS-CoV	NC_019843.3	+	29197	29554	357	1.444243132	23.33333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1679	MERS-CoV	NC_019843.3	+	29197	29559	362	0.254780539	4.0	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1680	MERS-CoV	NC_019843.3	+	29197	29701	504	1.671003067	25.33333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1681	MERS-CoV	NC_019843.3	+	29197	29724	527	4.794185882	87.5	N	Calu-3;Calu-3
vc_MERS-CoV_1682	MERS-CoV	NC_019843.3	+	29197	29733	536	1.930929388	31.33333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1683	MERS-CoV	NC_019843.3	+	29197	29806	609	2.991270384	43.5	N	Calu-3;Calu-3
vc_MERS-CoV_1684	MERS-CoV	NC_019843.3	+	29197	29818	621	3.673462102	59.66666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1685	MERS-CoV	NC_019843.3	+	29197	29842	645	11.57948196	188.3333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1686	MERS-CoV	NC_019843.3	+	29197	29844	647	1.797489353	30.0	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1687	MERS-CoV	NC_019843.3	+	29197	29962	765	1.680729431	26.66666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1688	MERS-CoV	NC_019843.3	-	29206	29615	409	1.70033606	30.0	NA	Calu-3
vc_MERS-CoV_1689	MERS-CoV	NC_019843.3	-	29211	29459	248	0.712551162	10.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1690	MERS-CoV	NC_019843.3	-	29211	29478	267	0.663863152	10.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1691	MERS-CoV	NC_019843.3	-	29211	29573	362	5.160674538	83.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1692	MERS-CoV	NC_019843.3	-	29211	29612	401	0.775789213	12.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1693	MERS-CoV	NC_019843.3	-	29211	29615	404	1.268495912	20.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1694	MERS-CoV	NC_019843.3	-	29211	29649	438	11.16268577	179.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1695	MERS-CoV	NC_019843.3	-	29211	29703	492	1.852197806	30.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1696	MERS-CoV	NC_019843.3	-	29211	29709	498	1.304846389	21.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1697	MERS-CoV	NC_019843.3	-	29211	29742	531	0.521283635	9.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1698	MERS-CoV	NC_019843.3	-	29211	29869	658	11.16092688	204.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1699	MERS-CoV	NC_019843.3	-	29211	29877	666	0.434122318	8.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1700	MERS-CoV	NC_019843.3	-	29211	29947	736	0.834776511	12.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1701	MERS-CoV	NC_019843.3	-	29211	29952	741	46.70531713	758.3333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1702	MERS-CoV	NC_019843.3	+	29275	29842	567	0.170033606	3.0	N	Calu-3
vc_MERS-CoV_1703	MERS-CoV	NC_019843.3	-	29282	29549	267	2.153759009	38.0	NA	Calu-3
vc_MERS-CoV_1704	MERS-CoV	NC_019843.3	+	29286	29921	635	18.31786776	292.6666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1705	MERS-CoV	NC_019843.3	+	29290	29842	552	0.340067212	6.0	N	Calu-3
vc_MERS-CoV_1706	MERS-CoV	NC_019843.3	+	29313	29921	608	2.0177341	37.0	N	Calu-3;Calu-3
vc_MERS-CoV_1707	MERS-CoV	NC_019843.3	+	29325	29921	596	2.947249171	52.0	N	Calu-3
vc_MERS-CoV_1708	MERS-CoV	NC_019843.3	+	29342	29733	391	0.170033606	3.0	N	Calu-3
vc_MERS-CoV_1709	MERS-CoV	NC_019843.3	+	29342	29842	500	0.283389343	5.0	N	Calu-3
vc_MERS-CoV_1710	MERS-CoV	NC_019843.3	+	29359	29554	195	0.453422949	8.0	N	Calu-3
vc_MERS-CoV_1711	MERS-CoV	NC_019843.3	+	29359	29818	459	0.170033606	3.0	N	Calu-3
vc_MERS-CoV_1712	MERS-CoV	NC_019843.3	+	29359	29921	562	3.023384377	55.5	N	Calu-3;Calu-3
vc_MERS-CoV_1713	MERS-CoV	NC_019843.3	-	29385	29593	208	2.210436878	39.0	NA	Calu-3
vc_MERS-CoV_1714	MERS-CoV	NC_019843.3	-	29385	29649	264	1.014546666	17.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1715	MERS-CoV	NC_019843.3	-	29385	30090	705	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1716	MERS-CoV	NC_019843.3	-	29397	29549	152	1.190235242	21.0	NA	Calu-3
vc_MERS-CoV_1717	MERS-CoV	NC_019843.3	-	29429	29703	274	0.226711475	4.0	NA	Calu-3
vc_MERS-CoV_1718	MERS-CoV	NC_019843.3	-	29471	30090	619	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1719	MERS-CoV	NC_019843.3	-	29506	29649	143	13.14926553	232.0	NA	Calu-3
vc_MERS-CoV_1720	MERS-CoV	NC_019843.3	-	29506	29709	203	25.0157979	459.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1721	MERS-CoV	NC_019843.3	+	29517	29842	325	1.076879505	19.0	N	Calu-3
vc_MERS-CoV_1722	MERS-CoV	NC_019843.3	-	29520	29703	183	0.510100818	9.0	NA	Calu-3
vc_MERS-CoV_1723	MERS-CoV	NC_019843.3	-	29520	30090	570	0.283389343	5.0	NA	Calu-3
vc_MERS-CoV_1724	MERS-CoV	NC_019843.3	-	29640	30000	360	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1725	MERS-CoV	NC_019843.3	-	29645	29812	167	2.186556495	36.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1726	MERS-CoV	NC_019843.3	-	29645	29869	224	8.906880963	141.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1727	MERS-CoV	NC_019843.3	-	29645	29947	302	1.942361707	31.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1728	MERS-CoV	NC_019843.3	-	29645	30003	358	0.643249299	11.0	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1729	MERS-CoV	NC_019843.3	+	29655	29921	266	23.88847657	384.0	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1730	MERS-CoV	NC_019843.3	+	29658	29902	244	0.85016803	15.0	N	Calu-3
vc_MERS-CoV_1731	MERS-CoV	NC_019843.3	-	29677	29879	202	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1732	MERS-CoV	NC_019843.3	-	29710	29869	159	0.698794137	11.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1733	MERS-CoV	NC_019843.3	-	29710	29877	167	0.163600062	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1734	MERS-CoV	NC_019843.3	-	29710	29879	169	0.682760867	11.33333333	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1735	MERS-CoV	NC_019843.3	-	29710	29947	237	5.152106663	83.66666667	NA	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1736	MERS-CoV	NC_019843.3	-	29710	29991	281	0.109066708	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1737	MERS-CoV	NC_019843.3	-	29710	30000	290	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1738	MERS-CoV	NC_019843.3	-	29710	30003	293	0.113355737	2.0	NA	Calu-3
vc_MERS-CoV_1739	MERS-CoV	NC_019843.3	+	29734	29899	165	0.561113533	8.333333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1740	MERS-CoV	NC_019843.3	+	29734	29902	168	0.806426077	13.33333333	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1741	MERS-CoV	NC_019843.3	+	29734	29911	177	14.90156445	234.6666667	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1742	MERS-CoV	NC_019843.3	+	29734	29962	228	1.786051941	30.0	N	Calu-3;Calu-3;Calu-3
vc_MERS-CoV_1743	MERS-CoV	NC_019843.3	+	29734	29964	230	3.500857231	64.0	N	Calu-3;Calu-3
vc_MERS-CoV_1744	MERS-CoV	NC_019843.3	+	29734	29972	238	26.8996516	495.0	N	Calu-3;Calu-3
vc_MERS-CoV_1745	MERS-CoV	NC_019843.3	+	29734	29983	249	1.568600179	29.0	N	Calu-3;Calu-3
vc_MERS-CoV_1746	MERS-CoV	NC_019843.3	+	29734	30054	320	0.464605767	8.5	N	Calu-3;Calu-3
vc_MERS-CoV_1747	MERS-CoV	NC_019843.3	-	29744	29998	254	7.528971398	137.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1748	MERS-CoV	NC_019843.3	-	29744	30090	346	0.453422949	8.0	NA	Calu-3
vc_MERS-CoV_1749	MERS-CoV	NC_019843.3	+	29748	29921	173	0.113355737	2.0	N	Calu-3
vc_MERS-CoV_1750	MERS-CoV	NC_019843.3	+	9	1302	1293	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_1751	MERS-CoV	NC_019843.3	+	9	28749	28740	0.157166518	3.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N	Calu-3
vc_MERS-CoV_1752	MERS-CoV	NC_019843.3	+	9	29475	29466	0.157166518	3.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1753	MERS-CoV	NC_019843.3	+	16	1110	1094	1.781220539	34.0	orf1ab	Calu-3
vc_MERS-CoV_1754	MERS-CoV	NC_019843.3	+	16	1201	1185	0.74334144	11.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1755	MERS-CoV	NC_019843.3	+	16	1299	1283	0.995387949	19.0	orf1ab	Calu-3
vc_MERS-CoV_1756	MERS-CoV	NC_019843.3	+	16	1796	1780	0.83822143	16.0	orf1ab	Calu-3
vc_MERS-CoV_1757	MERS-CoV	NC_019843.3	+	16	2381	2365	3.4576634	66.0	orf1ab	Calu-3
vc_MERS-CoV_1758	MERS-CoV	NC_019843.3	+	16	2448	2432	0.839533423	13.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1759	MERS-CoV	NC_019843.3	+	16	2627	2611	2.357497773	45.0	orf1ab	Calu-3
vc_MERS-CoV_1760	MERS-CoV	NC_019843.3	+	16	8404	8388	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_1761	MERS-CoV	NC_019843.3	+	16	28587	28571	2.514664291	48.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N	Calu-3
vc_MERS-CoV_1762	MERS-CoV	NC_019843.3	-	30	485	455	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1763	MERS-CoV	NC_019843.3	-	30	664	634	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1764	MERS-CoV	NC_019843.3	-	30	29405	29375	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_1765	MERS-CoV	NC_019843.3	+	50	463	413	0.89061027	17.0	orf1ab	Calu-3
vc_MERS-CoV_1766	MERS-CoV	NC_019843.3	-	69	487	418	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1767	MERS-CoV	NC_019843.3	-	244	1228	984	1.781220539	34.0	NA	Calu-3
vc_MERS-CoV_1768	MERS-CoV	NC_019843.3	+	310	567	257	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_1769	MERS-CoV	NC_019843.3	+	310	29169	28859	0.628666073	12.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1770	MERS-CoV	NC_019843.3	-	352	606	254	0.349987814	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1771	MERS-CoV	NC_019843.3	-	352	707	355	0.262381528	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1772	MERS-CoV	NC_019843.3	+	532	1097	565	0.83822143	16.0	orf1ab	Calu-3
vc_MERS-CoV_1773	MERS-CoV	NC_019843.3	+	532	28925	28393	0.209555358	4.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1774	MERS-CoV	NC_019843.3	-	546	780	234	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1775	MERS-CoV	NC_019843.3	-	768	1231	463	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1776	MERS-CoV	NC_019843.3	-	771	1231	460	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1777	MERS-CoV	NC_019843.3	-	773	1163	390	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1778	MERS-CoV	NC_019843.3	-	773	29478	28705	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_1779	MERS-CoV	NC_019843.3	+	817	1236	419	3.929162955	75.0	orf1ab	Calu-3
vc_MERS-CoV_1780	MERS-CoV	NC_019843.3	+	871	1110	239	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_1781	MERS-CoV	NC_019843.3	-	882	1228	346	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1782	MERS-CoV	NC_019843.3	-	918	1231	313	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_1783	MERS-CoV	NC_019843.3	-	918	1502	584	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1784	MERS-CoV	NC_019843.3	-	947	1261	314	2.095553576	40.0	NA	Calu-3
vc_MERS-CoV_1785	MERS-CoV	NC_019843.3	-	952	1231	279	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1786	MERS-CoV	NC_019843.3	-	1007	28689	27682	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1787	MERS-CoV	NC_019843.3	-	1017	1228	211	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1788	MERS-CoV	NC_019843.3	-	1017	1231	214	3.061846708	45.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1789	MERS-CoV	NC_019843.3	-	1056	1261	205	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1790	MERS-CoV	NC_019843.3	-	1085	1231	146	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1791	MERS-CoV	NC_019843.3	-	1179	26847	25668	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1792	MERS-CoV	NC_019843.3	-	1200	1502	302	1.362109824	26.0	NA	Calu-3
vc_MERS-CoV_1793	MERS-CoV	NC_019843.3	-	1213	28631	27418	5.396050458	103.0	NA	Calu-3
vc_MERS-CoV_1794	MERS-CoV	NC_019843.3	-	1227	1552	325	0.900507958	14.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1795	MERS-CoV	NC_019843.3	-	1227	13875	12648	1.571665182	30.0	NA	Calu-3
vc_MERS-CoV_1796	MERS-CoV	NC_019843.3	-	1229	1431	202	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1797	MERS-CoV	NC_019843.3	-	1229	1527	298	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1798	MERS-CoV	NC_019843.3	-	1229	2076	847	2.387628169	36.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1799	MERS-CoV	NC_019843.3	-	1229	2091	862	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_1800	MERS-CoV	NC_019843.3	-	1229	2191	962	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1801	MERS-CoV	NC_019843.3	-	1229	28689	27460	1.845256391	28.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1802	MERS-CoV	NC_019843.3	-	1229	29163	27934	1.781220539	34.0	NA	Calu-3
vc_MERS-CoV_1803	MERS-CoV	NC_019843.3	-	1229	29237	28008	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1804	MERS-CoV	NC_019843.3	-	1229	29504	28275	2.357497773	45.0	NA	Calu-3
vc_MERS-CoV_1805	MERS-CoV	NC_019843.3	-	1229	29615	28386	0.995387949	19.0	NA	Calu-3
vc_MERS-CoV_1806	MERS-CoV	NC_019843.3	-	1229	29952	28723	10.32060136	197.0	NA	Calu-3
vc_MERS-CoV_1807	MERS-CoV	NC_019843.3	-	1249	1502	253	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_1808	MERS-CoV	NC_019843.3	-	1262	1502	240	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1809	MERS-CoV	NC_019843.3	-	1262	1533	271	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_1810	MERS-CoV	NC_019843.3	-	1262	1540	278	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1811	MERS-CoV	NC_019843.3	-	1262	1566	304	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1812	MERS-CoV	NC_019843.3	-	1262	1779	517	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1813	MERS-CoV	NC_019843.3	-	1262	1965	703	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1814	MERS-CoV	NC_019843.3	-	1262	2191	929	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1815	MERS-CoV	NC_019843.3	-	1262	2199	937	15.14037459	289.0	NA	Calu-3
vc_MERS-CoV_1816	MERS-CoV	NC_019843.3	-	1262	2818	1556	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1817	MERS-CoV	NC_019843.3	-	1262	2957	1695	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1818	MERS-CoV	NC_019843.3	-	1262	28668	27406	2.514664291	48.0	NA	Calu-3
vc_MERS-CoV_1819	MERS-CoV	NC_019843.3	-	1262	28683	27421	2.081006168	33.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1820	MERS-CoV	NC_019843.3	-	1262	28788	27526	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1821	MERS-CoV	NC_019843.3	-	1262	28878	27616	5.396050458	103.0	NA	Calu-3
vc_MERS-CoV_1822	MERS-CoV	NC_019843.3	-	1262	29109	27847	10.26821252	196.0	NA	Calu-3
vc_MERS-CoV_1823	MERS-CoV	NC_019843.3	-	1262	29204	27942	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_1824	MERS-CoV	NC_019843.3	-	1262	29405	28143	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1825	MERS-CoV	NC_019843.3	-	1262	29545	28283	2.200331255	42.0	NA	Calu-3
vc_MERS-CoV_1826	MERS-CoV	NC_019843.3	-	1262	29879	28617	1.571665182	30.0	NA	Calu-3
vc_MERS-CoV_1827	MERS-CoV	NC_019843.3	-	1266	1502	236	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1828	MERS-CoV	NC_019843.3	-	1266	1651	385	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1829	MERS-CoV	NC_019843.3	-	1266	1777	511	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1830	MERS-CoV	NC_019843.3	-	1370	9517	8147	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_1831	MERS-CoV	NC_019843.3	-	1370	25243	23873	3.876774115	74.0	NA	Calu-3
vc_MERS-CoV_1832	MERS-CoV	NC_019843.3	+	1410	2012	602	1.7288317	33.0	orf1ab	Calu-3
vc_MERS-CoV_1833	MERS-CoV	NC_019843.3	-	1503	2117	614	1.047776788	20.0	NA	Calu-3
vc_MERS-CoV_1834	MERS-CoV	NC_019843.3	-	1503	2152	649	0.48998294	7.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1835	MERS-CoV	NC_019843.3	-	1503	5057	3554	4.574286677	69.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1836	MERS-CoV	NC_019843.3	-	1503	25927	24424	2.671830809	51.0	NA	Calu-3
vc_MERS-CoV_1837	MERS-CoV	NC_019843.3	-	1503	29644	28141	15.08798575	288.0	NA	Calu-3
vc_MERS-CoV_1838	MERS-CoV	NC_019843.3	+	1567	2250	683	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_1839	MERS-CoV	NC_019843.3	-	1578	2152	574	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1840	MERS-CoV	NC_019843.3	+	1594	2232	638	2.544357357	40.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1841	MERS-CoV	NC_019843.3	+	1594	29911	28317	23.35922967	359.5	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3;Calu-3
vc_MERS-CoV_1842	MERS-CoV	NC_019843.3	+	1623	2332	709	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_1843	MERS-CoV	NC_019843.3	-	1658	2152	494	0.402376654	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1844	MERS-CoV	NC_019843.3	-	1658	29210	27552	24.67514336	471.0	NA	Calu-3
vc_MERS-CoV_1845	MERS-CoV	NC_019843.3	-	1667	1817	150	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1846	MERS-CoV	NC_019843.3	-	1667	2091	424	1.863302444	27.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1847	MERS-CoV	NC_019843.3	-	1667	29175	27508	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1848	MERS-CoV	NC_019843.3	-	1667	29210	27543	4.191107152	80.0	NA	Calu-3
vc_MERS-CoV_1849	MERS-CoV	NC_019843.3	-	1680	2240	560	5.605605815	107.0	NA	Calu-3
vc_MERS-CoV_1850	MERS-CoV	NC_019843.3	+	1683	1930	247	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_1851	MERS-CoV	NC_019843.3	+	1683	1991	308	0.785832591	15.0	orf1ab	Calu-3
vc_MERS-CoV_1852	MERS-CoV	NC_019843.3	+	1683	2094	411	0.366721876	7.0	orf1ab	Calu-3
vc_MERS-CoV_1853	MERS-CoV	NC_019843.3	+	1683	2162	479	0.471499555	9.0	orf1ab	Calu-3
vc_MERS-CoV_1854	MERS-CoV	NC_019843.3	+	1683	2250	567	6.147263851	96.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1855	MERS-CoV	NC_019843.3	+	1683	2435	752	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_1856	MERS-CoV	NC_019843.3	+	1683	4656	2973	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_1857	MERS-CoV	NC_019843.3	+	1683	29911	28228	9.744324128	186.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1858	MERS-CoV	NC_019843.3	-	1688	2148	460	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1859	MERS-CoV	NC_019843.3	-	1688	25243	23555	19.22670406	367.0	NA	Calu-3
vc_MERS-CoV_1860	MERS-CoV	NC_019843.3	-	1701	2281	580	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_1861	MERS-CoV	NC_019843.3	-	1714	2311	597	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1862	MERS-CoV	NC_019843.3	-	1718	2148	430	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1863	MERS-CoV	NC_019843.3	-	1734	2223	489	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_1864	MERS-CoV	NC_019843.3	-	1734	2311	577	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1865	MERS-CoV	NC_019843.3	-	1787	1965	178	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_1866	MERS-CoV	NC_019843.3	-	1787	2117	330	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1867	MERS-CoV	NC_019843.3	-	1787	2199	412	0.41096235	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1868	MERS-CoV	NC_019843.3	-	1787	2211	424	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1869	MERS-CoV	NC_019843.3	-	1787	2240	453	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1870	MERS-CoV	NC_019843.3	-	1787	2311	524	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_1871	MERS-CoV	NC_019843.3	-	1787	2315	528	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1872	MERS-CoV	NC_019843.3	-	1787	28757	26970	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_1873	MERS-CoV	NC_019843.3	-	1790	2135	345	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1874	MERS-CoV	NC_019843.3	-	1790	2240	450	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1875	MERS-CoV	NC_019843.3	-	1790	28584	26794	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1876	MERS-CoV	NC_019843.3	-	1793	2152	359	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_1877	MERS-CoV	NC_019843.3	-	1803	2091	288	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1878	MERS-CoV	NC_019843.3	+	1825	2005	180	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_1879	MERS-CoV	NC_019843.3	+	1825	2250	425	1.152554467	22.0	orf1ab	Calu-3
vc_MERS-CoV_1880	MERS-CoV	NC_019843.3	+	1825	2747	922	2.147942415	41.0	orf1ab	Calu-3
vc_MERS-CoV_1881	MERS-CoV	NC_019843.3	+	1825	29542	27717	0.366721876	7.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1882	MERS-CoV	NC_019843.3	-	1832	2607	775	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1883	MERS-CoV	NC_019843.3	-	1869	2091	222	0.139995126	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1884	MERS-CoV	NC_019843.3	+	1873	23325	21452	5.23888394	100.0	orf1ab;S	Calu-3
vc_MERS-CoV_1885	MERS-CoV	NC_019843.3	-	1922	2091	169	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1886	MERS-CoV	NC_019843.3	-	1922	2619	697	2.606643884	39.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1887	MERS-CoV	NC_019843.3	+	1924	4366	2442	2.828997327	54.0	orf1ab	Calu-3
vc_MERS-CoV_1888	MERS-CoV	NC_019843.3	-	1930	2281	351	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1889	MERS-CoV	NC_019843.3	-	1930	2315	385	3.909528496	59.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1890	MERS-CoV	NC_019843.3	-	1930	28732	26802	48.6692318	929.0	NA	Calu-3
vc_MERS-CoV_1891	MERS-CoV	NC_019843.3	+	1932	2284	352	6.181883049	118.0	orf1ab	Calu-3
vc_MERS-CoV_1892	MERS-CoV	NC_019843.3	-	1951	2610	659	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_1893	MERS-CoV	NC_019843.3	-	1951	2619	668	2.462275452	47.0	NA	Calu-3
vc_MERS-CoV_1894	MERS-CoV	NC_019843.3	-	1951	3141	1190	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1895	MERS-CoV	NC_019843.3	-	1951	12864	10913	0.995387949	19.0	NA	Calu-3
vc_MERS-CoV_1896	MERS-CoV	NC_019843.3	-	1951	17306	15355	1.624054021	31.0	NA	Calu-3
vc_MERS-CoV_1897	MERS-CoV	NC_019843.3	-	1951	18720	16769	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_1898	MERS-CoV	NC_019843.3	-	1951	28597	26646	2.671830809	51.0	NA	Calu-3
vc_MERS-CoV_1899	MERS-CoV	NC_019843.3	-	1951	28878	26927	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1900	MERS-CoV	NC_019843.3	-	1951	29459	27508	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_1901	MERS-CoV	NC_019843.3	-	1951	29549	27598	1.309720985	25.0	NA	Calu-3
vc_MERS-CoV_1902	MERS-CoV	NC_019843.3	-	1951	29644	27693	6.970500542	106.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1903	MERS-CoV	NC_019843.3	-	1951	29649	27698	1.7288317	33.0	NA	Calu-3
vc_MERS-CoV_1904	MERS-CoV	NC_019843.3	-	1951	29869	27918	2.671830809	51.0	NA	Calu-3
vc_MERS-CoV_1905	MERS-CoV	NC_019843.3	+	1975	13952	11977	1.204943306	23.0	orf1ab	Calu-3
vc_MERS-CoV_1906	MERS-CoV	NC_019843.3	+	1989	2743	754	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_1907	MERS-CoV	NC_019843.3	-	2005	2337	332	0.89061027	17.0	NA	Calu-3
vc_MERS-CoV_1908	MERS-CoV	NC_019843.3	-	2005	2378	373	5.815161173	111.0	NA	Calu-3
vc_MERS-CoV_1909	MERS-CoV	NC_019843.3	+	2013	2232	219	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_1910	MERS-CoV	NC_019843.3	+	2013	2743	730	22.29980587	346.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_1911	MERS-CoV	NC_019843.3	-	2036	29210	27174	0.942999109	18.0	NA	Calu-3
vc_MERS-CoV_1912	MERS-CoV	NC_019843.3	-	2055	2240	185	0.961919825	15.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1913	MERS-CoV	NC_019843.3	-	2153	2451	298	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1914	MERS-CoV	NC_019843.3	-	2153	2552	399	0.166189545	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1915	MERS-CoV	NC_019843.3	-	2153	2568	415	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1916	MERS-CoV	NC_019843.3	-	2153	2597	444	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1917	MERS-CoV	NC_019843.3	-	2153	2607	454	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_1918	MERS-CoV	NC_019843.3	-	2153	2700	547	0.183798269	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1919	MERS-CoV	NC_019843.3	-	2153	3103	950	4.819773224	92.0	NA	Calu-3
vc_MERS-CoV_1920	MERS-CoV	NC_019843.3	-	2153	11041	8888	0.995387949	19.0	NA	Calu-3
vc_MERS-CoV_1921	MERS-CoV	NC_019843.3	-	2153	12094	9941	1.204943306	23.0	NA	Calu-3
vc_MERS-CoV_1922	MERS-CoV	NC_019843.3	-	2153	28293	26140	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1923	MERS-CoV	NC_019843.3	-	2153	28578	26425	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1924	MERS-CoV	NC_019843.3	-	2153	28861	26708	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1925	MERS-CoV	NC_019843.3	-	2153	29146	26993	4.243495991	81.0	NA	Calu-3
vc_MERS-CoV_1926	MERS-CoV	NC_019843.3	-	2153	29148	26995	11.10675579	171.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1927	MERS-CoV	NC_019843.3	-	2153	29201	27048	0.900507958	14.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1928	MERS-CoV	NC_019843.3	-	2153	29210	27057	5.448439297	104.0	NA	Calu-3
vc_MERS-CoV_1929	MERS-CoV	NC_019843.3	-	2153	29280	27127	1.938387058	37.0	NA	Calu-3
vc_MERS-CoV_1930	MERS-CoV	NC_019843.3	-	2153	29649	27496	3.148578333	48.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1931	MERS-CoV	NC_019843.3	+	2179	2332	153	0.995387949	19.0	orf1ab	Calu-3
vc_MERS-CoV_1932	MERS-CoV	NC_019843.3	-	2213	28732	26519	1.362109824	26.0	NA	Calu-3
vc_MERS-CoV_1933	MERS-CoV	NC_019843.3	+	2238	29921	27683	1.466887503	28.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1934	MERS-CoV	NC_019843.3	-	2249	2619	370	0.664758181	10.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1935	MERS-CoV	NC_019843.3	-	2249	2779	530	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1936	MERS-CoV	NC_019843.3	+	2398	2715	317	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_1937	MERS-CoV	NC_019843.3	+	2487	2835	348	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_1938	MERS-CoV	NC_019843.3	-	2510	2814	304	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1939	MERS-CoV	NC_019843.3	-	2510	2857	347	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1940	MERS-CoV	NC_019843.3	-	2510	2925	415	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_1941	MERS-CoV	NC_019843.3	-	2510	5877	3367	1.362109824	26.0	NA	Calu-3
vc_MERS-CoV_1942	MERS-CoV	NC_019843.3	-	2548	2952	404	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1943	MERS-CoV	NC_019843.3	-	2548	3158	610	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1944	MERS-CoV	NC_019843.3	+	2577	2882	305	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_1945	MERS-CoV	NC_019843.3	-	2608	3529	921	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1946	MERS-CoV	NC_019843.3	-	2608	29649	27041	11.68271119	223.0	NA	Calu-3
vc_MERS-CoV_1947	MERS-CoV	NC_019843.3	-	2612	29210	26598	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1948	MERS-CoV	NC_019843.3	-	2616	2952	336	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1949	MERS-CoV	NC_019843.3	-	2663	3156	493	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_1950	MERS-CoV	NC_019843.3	+	2713	3660	947	2.095553576	40.0	orf1ab	Calu-3
vc_MERS-CoV_1951	MERS-CoV	NC_019843.3	+	2713	18605	15892	2.724219649	52.0	orf1ab	Calu-3
vc_MERS-CoV_1952	MERS-CoV	NC_019843.3	+	2716	3011	295	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_1953	MERS-CoV	NC_019843.3	+	2716	3023	307	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_1954	MERS-CoV	NC_019843.3	+	2836	29911	27075	26.92786345	514.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_1955	MERS-CoV	NC_019843.3	-	2842	25813	22971	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_1956	MERS-CoV	NC_019843.3	+	2883	3518	635	2.986163846	57.0	orf1ab	Calu-3
vc_MERS-CoV_1957	MERS-CoV	NC_019843.3	+	2883	27122	24239	18.07414959	345.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_1958	MERS-CoV	NC_019843.3	-	2966	3348	382	0.192383965	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1959	MERS-CoV	NC_019843.3	-	2966	4299	1333	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_1960	MERS-CoV	NC_019843.3	-	2966	12702	9736	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_1961	MERS-CoV	NC_019843.3	-	2966	16600	13634	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_1962	MERS-CoV	NC_019843.3	+	3402	3977	575	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_1963	MERS-CoV	NC_019843.3	+	3402	27213	23811	2.462275452	47.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_1964	MERS-CoV	NC_019843.3	-	3463	9691	6228	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1965	MERS-CoV	NC_019843.3	+	3510	3674	164	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_1966	MERS-CoV	NC_019843.3	+	3510	4214	704	0.471499555	9.0	orf1ab	Calu-3
vc_MERS-CoV_1967	MERS-CoV	NC_019843.3	+	3510	4646	1136	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_1968	MERS-CoV	NC_019843.3	+	3510	28453	24943	0.314333036	6.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_1969	MERS-CoV	NC_019843.3	+	3520	3799	279	0.471499555	9.0	orf1ab	Calu-3
vc_MERS-CoV_1970	MERS-CoV	NC_019843.3	-	3526	6156	2630	17.65503888	337.0	NA	Calu-3
vc_MERS-CoV_1971	MERS-CoV	NC_019843.3	-	3526	28635	25109	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1972	MERS-CoV	NC_019843.3	-	3554	4217	663	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1973	MERS-CoV	NC_019843.3	-	3574	4217	643	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1974	MERS-CoV	NC_019843.3	-	3574	4746	1172	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1975	MERS-CoV	NC_019843.3	-	3574	26517	22943	19.54103709	373.0	NA	Calu-3
vc_MERS-CoV_1976	MERS-CoV	NC_019843.3	+	3581	4097	516	0.628666073	12.0	orf1ab	Calu-3
vc_MERS-CoV_1977	MERS-CoV	NC_019843.3	+	3581	4530	949	7.858325909	150.0	orf1ab	Calu-3
vc_MERS-CoV_1978	MERS-CoV	NC_019843.3	+	3630	5105	1475	23.57497773	450.0	orf1ab	Calu-3
vc_MERS-CoV_1979	MERS-CoV	NC_019843.3	+	3630	5315	1685	1.152554467	22.0	orf1ab	Calu-3
vc_MERS-CoV_1980	MERS-CoV	NC_019843.3	+	3655	6421	2766	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_1981	MERS-CoV	NC_019843.3	-	4094	12094	8000	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1982	MERS-CoV	NC_019843.3	-	4197	4539	342	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1983	MERS-CoV	NC_019843.3	+	4306	4527	221	0.681054912	13.0	orf1ab	Calu-3
vc_MERS-CoV_1984	MERS-CoV	NC_019843.3	-	4419	4822	403	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1985	MERS-CoV	NC_019843.3	+	4441	18605	14164	1.152554467	22.0	orf1ab	Calu-3
vc_MERS-CoV_1986	MERS-CoV	NC_019843.3	+	4485	25502	21017	1.781220539	34.0	orf1ab;S	Calu-3
vc_MERS-CoV_1987	MERS-CoV	NC_019843.3	-	4515	4822	307	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1988	MERS-CoV	NC_019843.3	-	4536	16890	12354	9.796712967	187.0	NA	Calu-3
vc_MERS-CoV_1989	MERS-CoV	NC_019843.3	-	4582	4822	240	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1990	MERS-CoV	NC_019843.3	+	4593	5202	609	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_1991	MERS-CoV	NC_019843.3	-	4720	4969	249	0.577151895	9.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1992	MERS-CoV	NC_019843.3	-	4807	4957	150	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1993	MERS-CoV	NC_019843.3	-	4848	5028	180	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_1994	MERS-CoV	NC_019843.3	-	4878	5112	234	1.5128773	23.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1995	MERS-CoV	NC_019843.3	-	4916	26757	21841	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_1996	MERS-CoV	NC_019843.3	-	5113	6156	1043	19.25048084	292.5	NA	Calu-3;Calu-3
vc_MERS-CoV_1997	MERS-CoV	NC_019843.3	-	5198	6373	1175	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_1998	MERS-CoV	NC_019843.3	-	5363	5953	590	1.25995613	18.0	NA	Calu-3;Calu-3
vc_MERS-CoV_1999	MERS-CoV	NC_019843.3	-	5390	5953	563	2.147942415	41.0	NA	Calu-3
vc_MERS-CoV_2000	MERS-CoV	NC_019843.3	-	5416	5997	581	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2001	MERS-CoV	NC_019843.3	-	5492	5805	313	0.139995126	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2002	MERS-CoV	NC_019843.3	-	5498	5953	455	0.419985377	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2003	MERS-CoV	NC_019843.3	-	5543	5916	373	3.248108043	62.0	NA	Calu-3
vc_MERS-CoV_2004	MERS-CoV	NC_019843.3	-	5601	5953	352	19.06953754	364.0	NA	Calu-3
vc_MERS-CoV_2005	MERS-CoV	NC_019843.3	-	5609	5900	291	5.815161173	111.0	NA	Calu-3
vc_MERS-CoV_2006	MERS-CoV	NC_019843.3	-	5609	5950	341	1.466887503	28.0	NA	Calu-3
vc_MERS-CoV_2007	MERS-CoV	NC_019843.3	-	5609	5958	349	1.519276342	29.0	NA	Calu-3
vc_MERS-CoV_2008	MERS-CoV	NC_019843.3	-	5621	6156	535	14.04020896	268.0	NA	Calu-3
vc_MERS-CoV_2009	MERS-CoV	NC_019843.3	+	5640	5908	268	2.933775006	56.0	orf1ab	Calu-3
vc_MERS-CoV_2010	MERS-CoV	NC_019843.3	+	5640	9656	4016	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2011	MERS-CoV	NC_019843.3	+	5640	28236	22596	0.157166518	3.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_2012	MERS-CoV	NC_019843.3	-	5645	5953	308	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2013	MERS-CoV	NC_019843.3	-	5653	6099	446	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2014	MERS-CoV	NC_019843.3	-	5709	5953	244	38.0342974	726.0	NA	Calu-3
vc_MERS-CoV_2015	MERS-CoV	NC_019843.3	+	5727	13906	8179	14.30215316	273.0	orf1ab	Calu-3
vc_MERS-CoV_2016	MERS-CoV	NC_019843.3	-	5739	5947	208	0.262381528	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2017	MERS-CoV	NC_019843.3	-	5739	5958	219	1.189521237	18.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2018	MERS-CoV	NC_019843.3	-	5795	6156	361	12.92581776	199.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2019	MERS-CoV	NC_019843.3	-	5901	6389	488	1.938387058	37.0	NA	Calu-3
vc_MERS-CoV_2020	MERS-CoV	NC_019843.3	-	5901	6645	744	1.414498664	27.0	NA	Calu-3
vc_MERS-CoV_2021	MERS-CoV	NC_019843.3	-	5901	6865	964	3.090941524	59.0	NA	Calu-3
vc_MERS-CoV_2022	MERS-CoV	NC_019843.3	-	5901	17605	11704	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2023	MERS-CoV	NC_019843.3	-	5901	25893	19992	2.514664291	48.0	NA	Calu-3
vc_MERS-CoV_2024	MERS-CoV	NC_019843.3	-	5901	27138	21237	2.462275452	47.0	NA	Calu-3
vc_MERS-CoV_2025	MERS-CoV	NC_019843.3	-	5901	28703	22802	10.3729902	198.0	NA	Calu-3
vc_MERS-CoV_2026	MERS-CoV	NC_019843.3	+	6104	6546	442	0.366721876	7.0	orf1ab	Calu-3
vc_MERS-CoV_2027	MERS-CoV	NC_019843.3	-	6157	6489	332	0.166189545	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2028	MERS-CoV	NC_019843.3	-	6157	6665	508	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2029	MERS-CoV	NC_019843.3	-	6157	6812	655	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2030	MERS-CoV	NC_019843.3	-	6157	6828	671	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2031	MERS-CoV	NC_019843.3	-	6157	6846	689	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2032	MERS-CoV	NC_019843.3	-	6157	7109	952	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2033	MERS-CoV	NC_019843.3	-	6157	7124	967	7.136690087	109.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2034	MERS-CoV	NC_019843.3	-	6157	7358	1201	5.448439297	104.0	NA	Calu-3
vc_MERS-CoV_2035	MERS-CoV	NC_019843.3	-	6157	7420	1263	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2036	MERS-CoV	NC_019843.3	-	6157	7720	1563	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2037	MERS-CoV	NC_019843.3	-	6157	7794	1637	2.043164736	39.0	NA	Calu-3
vc_MERS-CoV_2038	MERS-CoV	NC_019843.3	-	6157	22973	16816	16.13576253	308.0	NA	Calu-3
vc_MERS-CoV_2039	MERS-CoV	NC_019843.3	-	6157	26517	20360	2.462275452	47.0	NA	Calu-3
vc_MERS-CoV_2040	MERS-CoV	NC_019843.3	-	6157	27091	20934	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2041	MERS-CoV	NC_019843.3	+	6199	6546	347	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_2042	MERS-CoV	NC_019843.3	+	6219	6579	360	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2043	MERS-CoV	NC_019843.3	+	6243	6606	363	3.876774115	74.0	orf1ab	Calu-3
vc_MERS-CoV_2044	MERS-CoV	NC_019843.3	-	6256	6856	600	3.300496882	63.0	NA	Calu-3
vc_MERS-CoV_2045	MERS-CoV	NC_019843.3	-	6256	6865	609	1.670043818	26.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2046	MERS-CoV	NC_019843.3	-	6256	6974	718	2.095553576	40.0	NA	Calu-3
vc_MERS-CoV_2047	MERS-CoV	NC_019843.3	-	6256	14268	8012	2.305108933	44.0	NA	Calu-3
vc_MERS-CoV_2048	MERS-CoV	NC_019843.3	-	6256	14924	8668	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2049	MERS-CoV	NC_019843.3	-	6256	25238	18982	15.66426298	299.0	NA	Calu-3
vc_MERS-CoV_2050	MERS-CoV	NC_019843.3	-	6256	25280	19024	9.163995423	144.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2051	MERS-CoV	NC_019843.3	-	6256	25290	19034	1.309720985	25.0	NA	Calu-3
vc_MERS-CoV_2052	MERS-CoV	NC_019843.3	+	6267	6863	596	0.366721876	7.0	orf1ab	Calu-3
vc_MERS-CoV_2053	MERS-CoV	NC_019843.3	+	6278	6579	301	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_2054	MERS-CoV	NC_019843.3	-	6333	11290	4957	1.833609379	35.0	NA	Calu-3
vc_MERS-CoV_2055	MERS-CoV	NC_019843.3	+	6407	6680	273	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2056	MERS-CoV	NC_019843.3	+	6427	6579	152	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2057	MERS-CoV	NC_019843.3	+	6427	6752	325	0.89061027	17.0	orf1ab	Calu-3
vc_MERS-CoV_2058	MERS-CoV	NC_019843.3	+	6427	6859	432	0.332379091	5.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2059	MERS-CoV	NC_019843.3	+	6547	6841	294	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2060	MERS-CoV	NC_019843.3	-	6587	7011	424	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2061	MERS-CoV	NC_019843.3	-	6602	6960	358	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2062	MERS-CoV	NC_019843.3	-	6643	6877	234	5.867550012	112.0	NA	Calu-3
vc_MERS-CoV_2063	MERS-CoV	NC_019843.3	-	6651	6846	195	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2064	MERS-CoV	NC_019843.3	-	6651	7803	1152	5.23888394	100.0	NA	Calu-3
vc_MERS-CoV_2065	MERS-CoV	NC_019843.3	+	6656	6875	219	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_2066	MERS-CoV	NC_019843.3	+	6656	7392	736	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2067	MERS-CoV	NC_019843.3	+	6681	7294	613	0.995387949	19.0	orf1ab	Calu-3
vc_MERS-CoV_2068	MERS-CoV	NC_019843.3	+	6681	7342	661	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_2069	MERS-CoV	NC_019843.3	+	6681	11110	4429	44.9496242	858.0	orf1ab	Calu-3
vc_MERS-CoV_2070	MERS-CoV	NC_019843.3	+	6681	27122	20441	143.4406423	2738.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_2071	MERS-CoV	NC_019843.3	+	6876	10343	3467	0.681054912	13.0	orf1ab	Calu-3
vc_MERS-CoV_2072	MERS-CoV	NC_019843.3	+	6913	7161	248	0.576277233	11.0	orf1ab	Calu-3
vc_MERS-CoV_2073	MERS-CoV	NC_019843.3	+	6913	7198	285	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_2074	MERS-CoV	NC_019843.3	+	6913	7320	407	1.110500647	17.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2075	MERS-CoV	NC_019843.3	-	7012	7183	171	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2076	MERS-CoV	NC_019843.3	-	7012	7358	346	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2077	MERS-CoV	NC_019843.3	+	7066	7342	276	1.047776788	20.0	orf1ab	Calu-3
vc_MERS-CoV_2078	MERS-CoV	NC_019843.3	-	7330	7803	473	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2079	MERS-CoV	NC_019843.3	-	7434	7828	394	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2080	MERS-CoV	NC_019843.3	-	7442	7828	386	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2081	MERS-CoV	NC_019843.3	+	7445	7966	521	1.100165627	21.0	orf1ab	Calu-3
vc_MERS-CoV_2082	MERS-CoV	NC_019843.3	+	7447	7782	335	0.471499555	9.0	orf1ab	Calu-3
vc_MERS-CoV_2083	MERS-CoV	NC_019843.3	+	7561	8246	685	0.523888394	10.0	orf1ab	Calu-3
vc_MERS-CoV_2084	MERS-CoV	NC_019843.3	-	7574	7822	248	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2085	MERS-CoV	NC_019843.3	-	7574	7881	307	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2086	MERS-CoV	NC_019843.3	-	7574	7888	314	1.152554467	22.0	NA	Calu-3
vc_MERS-CoV_2087	MERS-CoV	NC_019843.3	-	7574	7929	355	0.785832591	15.0	NA	Calu-3
vc_MERS-CoV_2088	MERS-CoV	NC_019843.3	-	7574	19757	12183	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2089	MERS-CoV	NC_019843.3	-	7602	7788	186	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2090	MERS-CoV	NC_019843.3	-	7602	7794	192	0.38476793	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2091	MERS-CoV	NC_019843.3	-	7602	7888	286	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2092	MERS-CoV	NC_019843.3	-	7610	7794	184	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2093	MERS-CoV	NC_019843.3	-	7610	7828	218	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2094	MERS-CoV	NC_019843.3	-	7637	8601	964	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2095	MERS-CoV	NC_019843.3	+	7678	7893	215	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2096	MERS-CoV	NC_019843.3	-	7725	7888	163	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2097	MERS-CoV	NC_019843.3	-	7725	7944	219	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2098	MERS-CoV	NC_019843.3	-	7751	7944	193	0.262381528	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2099	MERS-CoV	NC_019843.3	-	7751	8035	284	1.047776788	20.0	NA	Calu-3
vc_MERS-CoV_2100	MERS-CoV	NC_019843.3	-	7804	7975	171	0.865290512	14.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2101	MERS-CoV	NC_019843.3	-	7804	8037	233	0.349987814	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2102	MERS-CoV	NC_019843.3	-	7804	8043	239	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2103	MERS-CoV	NC_019843.3	-	7815	8030	215	2.095553576	40.0	NA	Calu-3
vc_MERS-CoV_2104	MERS-CoV	NC_019843.3	+	7858	8265	407	0.944311101	15.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2105	MERS-CoV	NC_019843.3	-	7931	9517	1586	13.88304244	265.0	NA	Calu-3
vc_MERS-CoV_2106	MERS-CoV	NC_019843.3	-	8093	8601	508	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2107	MERS-CoV	NC_019843.3	-	8110	8883	773	1.519276342	29.0	NA	Calu-3
vc_MERS-CoV_2108	MERS-CoV	NC_019843.3	-	8110	9164	1054	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2109	MERS-CoV	NC_019843.3	-	8110	10167	2057	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2110	MERS-CoV	NC_019843.3	-	8110	10713	2603	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2111	MERS-CoV	NC_019843.3	-	8110	11736	3626	17.13115048	327.0	NA	Calu-3
vc_MERS-CoV_2112	MERS-CoV	NC_019843.3	-	8110	12014	3904	1.624054021	31.0	NA	Calu-3
vc_MERS-CoV_2113	MERS-CoV	NC_019843.3	+	8122	8489	367	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2114	MERS-CoV	NC_019843.3	+	8122	9435	1313	1.204943306	23.0	orf1ab	Calu-3
vc_MERS-CoV_2115	MERS-CoV	NC_019843.3	+	8122	18010	9888	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_2116	MERS-CoV	NC_019843.3	-	8160	8319	159	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2117	MERS-CoV	NC_019843.3	-	8191	8601	410	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2118	MERS-CoV	NC_019843.3	-	8224	8601	377	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2119	MERS-CoV	NC_019843.3	+	8266	9384	1118	0.83822143	16.0	orf1ab	Calu-3
vc_MERS-CoV_2120	MERS-CoV	NC_019843.3	-	8602	9171	569	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2121	MERS-CoV	NC_019843.3	-	8602	9360	758	5.815161173	111.0	NA	Calu-3
vc_MERS-CoV_2122	MERS-CoV	NC_019843.3	-	8602	9496	894	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2123	MERS-CoV	NC_019843.3	-	8620	8938	318	0.340964787	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2124	MERS-CoV	NC_019843.3	-	8620	9438	818	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2125	MERS-CoV	NC_019843.3	-	8620	9471	851	11.47315583	219.0	NA	Calu-3
vc_MERS-CoV_2126	MERS-CoV	NC_019843.3	-	8620	25589	16969	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2127	MERS-CoV	NC_019843.3	-	8734	9517	783	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_2128	MERS-CoV	NC_019843.3	-	8769	8938	169	0.306184671	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2129	MERS-CoV	NC_019843.3	+	8794	9189	395	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2130	MERS-CoV	NC_019843.3	-	8839	9171	332	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2131	MERS-CoV	NC_019843.3	-	8846	9364	518	1.414498664	27.0	NA	Calu-3
vc_MERS-CoV_2132	MERS-CoV	NC_019843.3	-	8903	9517	614	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2133	MERS-CoV	NC_019843.3	-	8987	9517	530	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2134	MERS-CoV	NC_019843.3	-	9024	9364	340	0.455202824	6.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2135	MERS-CoV	NC_019843.3	-	9063	9540	477	0.89061027	17.0	NA	Calu-3
vc_MERS-CoV_2136	MERS-CoV	NC_019843.3	-	9180	9364	184	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2137	MERS-CoV	NC_019843.3	-	9227	9540	313	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_2138	MERS-CoV	NC_019843.3	-	9227	28732	19505	2.56705313	49.0	NA	Calu-3
vc_MERS-CoV_2139	MERS-CoV	NC_019843.3	-	9365	22908	13543	104.8168284	1608.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2140	MERS-CoV	NC_019843.3	-	9365	27148	17783	55.68933628	1063.0	NA	Calu-3
vc_MERS-CoV_2141	MERS-CoV	NC_019843.3	+	9385	9756	371	6.200527352	95.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2142	MERS-CoV	NC_019843.3	+	9385	9859	474	1.309720985	25.0	orf1ab	Calu-3
vc_MERS-CoV_2143	MERS-CoV	NC_019843.3	-	9518	10003	485	4.191107152	80.0	NA	Calu-3
vc_MERS-CoV_2144	MERS-CoV	NC_019843.3	-	9518	12094	2576	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2145	MERS-CoV	NC_019843.3	-	9541	10005	464	0.48998294	7.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2146	MERS-CoV	NC_019843.3	-	9801	9971	170	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2147	MERS-CoV	NC_019843.3	-	9801	21965	12164	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2148	MERS-CoV	NC_019843.3	-	10004	10308	304	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2149	MERS-CoV	NC_019843.3	+	10077	10259	182	0.576277233	11.0	orf1ab	Calu-3
vc_MERS-CoV_2150	MERS-CoV	NC_019843.3	+	10077	10304	227	0.315207698	4.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2151	MERS-CoV	NC_019843.3	+	10077	10671	594	1.362109824	26.0	orf1ab	Calu-3
vc_MERS-CoV_2152	MERS-CoV	NC_019843.3	+	10077	15932	5855	0.83822143	16.0	orf1ab	Calu-3
vc_MERS-CoV_2153	MERS-CoV	NC_019843.3	-	10124	12094	1970	2.200331255	42.0	NA	Calu-3
vc_MERS-CoV_2154	MERS-CoV	NC_019843.3	-	10351	11022	671	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2155	MERS-CoV	NC_019843.3	-	10543	11131	588	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2156	MERS-CoV	NC_019843.3	+	10597	12318	1721	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2157	MERS-CoV	NC_019843.3	-	10693	10896	203	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2158	MERS-CoV	NC_019843.3	-	10693	11041	348	5.080566347	79.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2159	MERS-CoV	NC_019843.3	-	10693	11080	387	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2160	MERS-CoV	NC_019843.3	-	10693	14090	3397	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2161	MERS-CoV	NC_019843.3	+	10783	11595	812	12.15421074	232.0	orf1ab	Calu-3
vc_MERS-CoV_2162	MERS-CoV	NC_019843.3	-	10810	11098	288	1.257332146	24.0	NA	Calu-3
vc_MERS-CoV_2163	MERS-CoV	NC_019843.3	-	10810	11131	321	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2164	MERS-CoV	NC_019843.3	+	10812	11087	275	1.781220539	34.0	orf1ab	Calu-3
vc_MERS-CoV_2165	MERS-CoV	NC_019843.3	+	10885	11114	229	2.881386167	55.0	orf1ab	Calu-3
vc_MERS-CoV_2166	MERS-CoV	NC_019843.3	-	10897	11141	244	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2167	MERS-CoV	NC_019843.3	-	10897	11160	263	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2168	MERS-CoV	NC_019843.3	-	11000	11146	146	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2169	MERS-CoV	NC_019843.3	-	11000	11479	479	17.92911284	274.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2170	MERS-CoV	NC_019843.3	-	11000	11611	611	4.557829027	87.0	NA	Calu-3
vc_MERS-CoV_2171	MERS-CoV	NC_019843.3	-	11024	11628	604	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2172	MERS-CoV	NC_019843.3	-	11046	12094	1048	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_2173	MERS-CoV	NC_019843.3	-	11068	11352	284	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2174	MERS-CoV	NC_019843.3	-	11122	11521	399	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2175	MERS-CoV	NC_019843.3	-	11124	11495	371	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2176	MERS-CoV	NC_019843.3	-	11124	11623	499	0.785832591	15.0	NA	Calu-3
vc_MERS-CoV_2177	MERS-CoV	NC_019843.3	-	11124	11630	506	1.257332146	24.0	NA	Calu-3
vc_MERS-CoV_2178	MERS-CoV	NC_019843.3	-	11128	11479	351	0.638126431	10.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2179	MERS-CoV	NC_019843.3	-	11128	11626	498	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2180	MERS-CoV	NC_019843.3	-	11132	11645	513	1.781220539	34.0	NA	Calu-3
vc_MERS-CoV_2181	MERS-CoV	NC_019843.3	-	11132	11758	626	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2182	MERS-CoV	NC_019843.3	-	11132	11814	682	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2183	MERS-CoV	NC_019843.3	-	11132	11852	720	1.204943306	23.0	NA	Calu-3
vc_MERS-CoV_2184	MERS-CoV	NC_019843.3	-	11132	14570	3438	3.562441079	68.0	NA	Calu-3
vc_MERS-CoV_2185	MERS-CoV	NC_019843.3	-	11143	11290	147	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2186	MERS-CoV	NC_019843.3	-	11143	11352	209	1.152554467	22.0	NA	Calu-3
vc_MERS-CoV_2187	MERS-CoV	NC_019843.3	-	11143	11521	378	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2188	MERS-CoV	NC_019843.3	-	11174	11348	174	2.357497773	45.0	NA	Calu-3
vc_MERS-CoV_2189	MERS-CoV	NC_019843.3	-	11174	11352	178	1.047776788	20.0	NA	Calu-3
vc_MERS-CoV_2190	MERS-CoV	NC_019843.3	-	11193	11352	159	0.376182234	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2191	MERS-CoV	NC_019843.3	-	11193	11521	328	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2192	MERS-CoV	NC_019843.3	-	11201	11626	425	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2193	MERS-CoV	NC_019843.3	-	11204	11352	148	1.257332146	24.0	NA	Calu-3
vc_MERS-CoV_2194	MERS-CoV	NC_019843.3	+	11218	11595	377	0.83822143	16.0	orf1ab	Calu-3
vc_MERS-CoV_2195	MERS-CoV	NC_019843.3	+	11331	12402	1071	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2196	MERS-CoV	NC_019843.3	-	11397	11630	233	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2197	MERS-CoV	NC_019843.3	-	11496	11717	221	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2198	MERS-CoV	NC_019843.3	-	11496	22563	11067	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2199	MERS-CoV	NC_019843.3	+	11506	11678	172	0.785832591	15.0	orf1ab	Calu-3
vc_MERS-CoV_2200	MERS-CoV	NC_019843.3	-	11532	11727	195	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2201	MERS-CoV	NC_019843.3	-	11640	12063	423	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2202	MERS-CoV	NC_019843.3	-	11640	12085	445	3.143330364	60.0	NA	Calu-3
vc_MERS-CoV_2203	MERS-CoV	NC_019843.3	-	11656	12000	344	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2204	MERS-CoV	NC_019843.3	-	11689	12094	405	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2205	MERS-CoV	NC_019843.3	-	11715	12014	299	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2206	MERS-CoV	NC_019843.3	-	11728	12639	911	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2207	MERS-CoV	NC_019843.3	-	11788	12356	568	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2208	MERS-CoV	NC_019843.3	-	11788	12371	583	0.995387949	19.0	NA	Calu-3
vc_MERS-CoV_2209	MERS-CoV	NC_019843.3	-	11788	12570	782	2.409886612	46.0	NA	Calu-3
vc_MERS-CoV_2210	MERS-CoV	NC_019843.3	-	11788	12675	887	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2211	MERS-CoV	NC_019843.3	-	11788	18851	7063	6.548604924	125.0	NA	Calu-3
vc_MERS-CoV_2212	MERS-CoV	NC_019843.3	+	11799	12334	535	3.719607597	71.0	orf1ab	Calu-3
vc_MERS-CoV_2213	MERS-CoV	NC_019843.3	-	11825	12411	586	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2214	MERS-CoV	NC_019843.3	-	11825	25243	13418	1.362109824	26.0	NA	Calu-3
vc_MERS-CoV_2215	MERS-CoV	NC_019843.3	-	12068	12411	343	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2216	MERS-CoV	NC_019843.3	-	12095	12291	196	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2217	MERS-CoV	NC_019843.3	-	12095	12508	413	0.953771459	13.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2218	MERS-CoV	NC_019843.3	-	12095	12611	516	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2219	MERS-CoV	NC_019843.3	-	12095	12739	644	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2220	MERS-CoV	NC_019843.3	-	12095	27356	15261	1.309720985	25.0	NA	Calu-3
vc_MERS-CoV_2221	MERS-CoV	NC_019843.3	-	12155	12475	320	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2222	MERS-CoV	NC_019843.3	-	12155	12675	520	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2223	MERS-CoV	NC_019843.3	-	12155	21008	8853	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2224	MERS-CoV	NC_019843.3	+	12199	12402	203	0.419110715	8.0	orf1ab	Calu-3
vc_MERS-CoV_2225	MERS-CoV	NC_019843.3	+	12216	12548	332	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2226	MERS-CoV	NC_019843.3	-	12468	12683	215	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2227	MERS-CoV	NC_019843.3	-	12468	12913	445	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2228	MERS-CoV	NC_019843.3	-	12468	27814	15346	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2229	MERS-CoV	NC_019843.3	+	12486	12681	195	0.366721876	7.0	orf1ab	Calu-3
vc_MERS-CoV_2230	MERS-CoV	NC_019843.3	-	12513	25243	12730	6.9153268	132.0	NA	Calu-3
vc_MERS-CoV_2231	MERS-CoV	NC_019843.3	-	12641	12792	151	0.166189545	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2232	MERS-CoV	NC_019843.3	-	12722	14491	1769	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2233	MERS-CoV	NC_019843.3	+	12829	12993	164	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2234	MERS-CoV	NC_019843.3	+	12829	13369	540	1.466887503	28.0	orf1ab	Calu-3
vc_MERS-CoV_2235	MERS-CoV	NC_019843.3	-	12898	13070	172	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2236	MERS-CoV	NC_019843.3	-	12898	13703	805	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2237	MERS-CoV	NC_019843.3	-	12939	13128	189	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2238	MERS-CoV	NC_019843.3	-	12939	13677	738	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2239	MERS-CoV	NC_019843.3	+	13093	13377	284	0.402376654	6.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2240	MERS-CoV	NC_019843.3	+	13093	13729	636	0.681054912	13.0	orf1ab	Calu-3
vc_MERS-CoV_2241	MERS-CoV	NC_019843.3	+	13093	13756	663	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_2242	MERS-CoV	NC_019843.3	+	13093	13766	673	2.514664291	48.0	orf1ab	Calu-3
vc_MERS-CoV_2243	MERS-CoV	NC_019843.3	+	13093	14312	1219	0.733443752	14.0	orf1ab	Calu-3
vc_MERS-CoV_2244	MERS-CoV	NC_019843.3	+	13093	16871	3778	0.942999109	18.0	orf1ab	Calu-3
vc_MERS-CoV_2245	MERS-CoV	NC_019843.3	-	13127	13345	218	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2246	MERS-CoV	NC_019843.3	+	13275	13435	160	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2247	MERS-CoV	NC_019843.3	-	13517	13792	275	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2248	MERS-CoV	NC_019843.3	-	13517	13875	358	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2249	MERS-CoV	NC_019843.3	-	13517	14161	644	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2250	MERS-CoV	NC_019843.3	+	13538	13865	327	0.366721876	7.0	orf1ab	Calu-3
vc_MERS-CoV_2251	MERS-CoV	NC_019843.3	+	13538	13954	416	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2252	MERS-CoV	NC_019843.3	+	13538	14305	767	0.471499555	9.0	orf1ab	Calu-3
vc_MERS-CoV_2253	MERS-CoV	NC_019843.3	+	13538	14444	906	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2254	MERS-CoV	NC_019843.3	-	13573	13716	143	0.942999109	18.0	NA	Calu-3
vc_MERS-CoV_2255	MERS-CoV	NC_019843.3	-	13573	13875	302	2.200331255	42.0	NA	Calu-3
vc_MERS-CoV_2256	MERS-CoV	NC_019843.3	-	13573	13893	320	1.885998218	36.0	NA	Calu-3
vc_MERS-CoV_2257	MERS-CoV	NC_019843.3	+	13579	13729	150	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2258	MERS-CoV	NC_019843.3	+	13579	13756	177	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_2259	MERS-CoV	NC_019843.3	+	13579	13795	216	2.56705313	49.0	orf1ab	Calu-3
vc_MERS-CoV_2260	MERS-CoV	NC_019843.3	+	13579	13954	375	0.524763056	8.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2261	MERS-CoV	NC_019843.3	+	13579	14009	430	0.83822143	16.0	orf1ab	Calu-3
vc_MERS-CoV_2262	MERS-CoV	NC_019843.3	+	13579	14312	733	0.576277233	11.0	orf1ab	Calu-3
vc_MERS-CoV_2263	MERS-CoV	NC_019843.3	+	13579	14820	1241	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_2264	MERS-CoV	NC_019843.3	+	13579	28001	14422	6.862937961	131.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_2265	MERS-CoV	NC_019843.3	+	13587	13756	169	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2266	MERS-CoV	NC_019843.3	+	13593	13928	335	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_2267	MERS-CoV	NC_019843.3	+	13602	13978	376	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2268	MERS-CoV	NC_019843.3	+	13634	13865	231	0.942999109	18.0	orf1ab	Calu-3
vc_MERS-CoV_2269	MERS-CoV	NC_019843.3	+	13634	14248	614	7.439215194	142.0	orf1ab	Calu-3
vc_MERS-CoV_2270	MERS-CoV	NC_019843.3	-	13679	13893	214	3.562441079	68.0	NA	Calu-3
vc_MERS-CoV_2271	MERS-CoV	NC_019843.3	-	13686	13875	189	38.71535231	739.0	NA	Calu-3
vc_MERS-CoV_2272	MERS-CoV	NC_019843.3	+	13704	13906	202	1.676442861	32.0	orf1ab	Calu-3
vc_MERS-CoV_2273	MERS-CoV	NC_019843.3	-	13781	24261	10480	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2274	MERS-CoV	NC_019843.3	-	13976	14256	280	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2275	MERS-CoV	NC_019843.3	-	14045	14570	525	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2276	MERS-CoV	NC_019843.3	+	14057	14444	387	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2277	MERS-CoV	NC_019843.3	+	14460	14690	230	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2278	MERS-CoV	NC_019843.3	+	14466	15225	759	1.938387058	37.0	orf1ab	Calu-3
vc_MERS-CoV_2279	MERS-CoV	NC_019843.3	+	14466	27213	12747	7.963103588	152.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_2280	MERS-CoV	NC_019843.3	-	14590	14882	292	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2281	MERS-CoV	NC_019843.3	-	14617	14823	206	0.690952601	10.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2282	MERS-CoV	NC_019843.3	-	14617	15040	423	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2283	MERS-CoV	NC_019843.3	-	14660	14882	222	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2284	MERS-CoV	NC_019843.3	+	14691	14864	173	0.38476793	6.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2285	MERS-CoV	NC_019843.3	-	15004	15655	651	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2286	MERS-CoV	NC_019843.3	+	15191	15634	443	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2287	MERS-CoV	NC_019843.3	+	15447	15684	237	0.218578385	3.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2288	MERS-CoV	NC_019843.3	+	15447	15924	477	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2289	MERS-CoV	NC_019843.3	+	15447	16854	1407	0.83822143	16.0	orf1ab	Calu-3
vc_MERS-CoV_2290	MERS-CoV	NC_019843.3	-	15514	15666	152	2.56705313	49.0	NA	Calu-3
vc_MERS-CoV_2291	MERS-CoV	NC_019843.3	+	16177	16403	226	0.139995126	2.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2292	MERS-CoV	NC_019843.3	+	16189	16403	214	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2293	MERS-CoV	NC_019843.3	+	16328	16747	419	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2294	MERS-CoV	NC_019843.3	-	16390	16890	500	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2295	MERS-CoV	NC_019843.3	-	16390	25194	8804	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2296	MERS-CoV	NC_019843.3	+	16503	16702	199	2.938148314	46.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2297	MERS-CoV	NC_019843.3	+	16503	16797	294	9.744324128	186.0	orf1ab	Calu-3
vc_MERS-CoV_2298	MERS-CoV	NC_019843.3	+	16531	16702	171	0.366721876	7.0	orf1ab	Calu-3
vc_MERS-CoV_2299	MERS-CoV	NC_019843.3	+	16531	17002	471	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2300	MERS-CoV	NC_019843.3	+	16531	19919	3388	0.366721876	7.0	orf1ab	Calu-3
vc_MERS-CoV_2301	MERS-CoV	NC_019843.3	-	16540	16861	321	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2302	MERS-CoV	NC_019843.3	-	16540	16865	325	1.047776788	20.0	NA	Calu-3
vc_MERS-CoV_2303	MERS-CoV	NC_019843.3	-	16540	16878	338	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2304	MERS-CoV	NC_019843.3	-	16540	16885	345	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2305	MERS-CoV	NC_019843.3	-	16540	16892	352	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2306	MERS-CoV	NC_019843.3	-	16540	16904	364	1.781220539	34.0	NA	Calu-3
vc_MERS-CoV_2307	MERS-CoV	NC_019843.3	-	16540	17558	1018	5.1864951	99.0	NA	Calu-3
vc_MERS-CoV_2308	MERS-CoV	NC_019843.3	-	16582	16908	326	0.376182234	5.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2309	MERS-CoV	NC_019843.3	-	16585	16908	323	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_2310	MERS-CoV	NC_019843.3	-	16588	16878	290	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2311	MERS-CoV	NC_019843.3	-	16623	18059	1436	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2312	MERS-CoV	NC_019843.3	-	16756	16908	152	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2313	MERS-CoV	NC_019843.3	+	16799	17332	533	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2314	MERS-CoV	NC_019843.3	-	16802	16982	180	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2315	MERS-CoV	NC_019843.3	-	16802	17306	504	1.100165627	21.0	NA	Calu-3
vc_MERS-CoV_2316	MERS-CoV	NC_019843.3	+	16872	17146	274	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_2317	MERS-CoV	NC_019843.3	+	16872	17320	448	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_2318	MERS-CoV	NC_019843.3	+	16872	17893	1021	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_2319	MERS-CoV	NC_019843.3	-	16891	17282	391	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2320	MERS-CoV	NC_019843.3	-	16891	18452	1561	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2321	MERS-CoV	NC_019843.3	-	16909	17189	280	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2322	MERS-CoV	NC_019843.3	-	16909	17345	436	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2323	MERS-CoV	NC_019843.3	-	16909	17747	838	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2324	MERS-CoV	NC_019843.3	-	16909	22703	5794	0.785832591	15.0	NA	Calu-3
vc_MERS-CoV_2325	MERS-CoV	NC_019843.3	+	16942	17332	390	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2326	MERS-CoV	NC_019843.3	+	16942	17522	580	2.724219649	52.0	orf1ab	Calu-3
vc_MERS-CoV_2327	MERS-CoV	NC_019843.3	-	16957	18059	1102	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2328	MERS-CoV	NC_019843.3	-	16972	17345	373	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2329	MERS-CoV	NC_019843.3	+	17025	17224	199	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2330	MERS-CoV	NC_019843.3	+	17025	17323	298	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2331	MERS-CoV	NC_019843.3	+	17025	17418	393	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2332	MERS-CoV	NC_019843.3	+	17025	27245	10220	0.681054912	13.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_2333	MERS-CoV	NC_019843.3	-	17058	17293	235	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2334	MERS-CoV	NC_019843.3	-	17058	17356	298	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2335	MERS-CoV	NC_019843.3	+	17130	17535	405	3.038552685	58.0	orf1ab	Calu-3
vc_MERS-CoV_2336	MERS-CoV	NC_019843.3	+	17333	17726	393	1.047776788	20.0	orf1ab	Calu-3
vc_MERS-CoV_2337	MERS-CoV	NC_019843.3	+	17333	17893	560	5.710383494	109.0	orf1ab	Calu-3
vc_MERS-CoV_2338	MERS-CoV	NC_019843.3	+	17333	18160	827	0.785832591	15.0	orf1ab	Calu-3
vc_MERS-CoV_2339	MERS-CoV	NC_019843.3	-	17347	17631	284	0.236187108	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2340	MERS-CoV	NC_019843.3	-	17347	17841	494	1.100165627	21.0	NA	Calu-3
vc_MERS-CoV_2341	MERS-CoV	NC_019843.3	-	17347	17978	631	4.714995546	90.0	NA	Calu-3
vc_MERS-CoV_2342	MERS-CoV	NC_019843.3	-	17347	18002	655	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2343	MERS-CoV	NC_019843.3	-	17347	18047	700	0.498568636	7.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2344	MERS-CoV	NC_019843.3	-	17347	18224	877	3.824385276	73.0	NA	Calu-3
vc_MERS-CoV_2345	MERS-CoV	NC_019843.3	+	17385	17589	204	2.61944197	50.0	orf1ab	Calu-3
vc_MERS-CoV_2346	MERS-CoV	NC_019843.3	+	17390	17572	182	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2347	MERS-CoV	NC_019843.3	+	17390	17589	199	0.471499555	9.0	orf1ab	Calu-3
vc_MERS-CoV_2348	MERS-CoV	NC_019843.3	-	17463	17844	381	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2349	MERS-CoV	NC_019843.3	-	17463	18035	572	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2350	MERS-CoV	NC_019843.3	-	17689	18054	365	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2351	MERS-CoV	NC_019843.3	-	17710	18059	349	0.253795832	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2352	MERS-CoV	NC_019843.3	-	17879	18033	154	4.191107152	80.0	NA	Calu-3
vc_MERS-CoV_2353	MERS-CoV	NC_019843.3	-	17885	18054	169	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2354	MERS-CoV	NC_019843.3	+	17887	21023	3136	120.8610525	2307.0	orf1ab	Calu-3
vc_MERS-CoV_2355	MERS-CoV	NC_019843.3	+	17919	18227	308	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2356	MERS-CoV	NC_019843.3	+	17919	18238	319	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2357	MERS-CoV	NC_019843.3	+	17919	18373	454	0.314333036	6.0	orf1ab	Calu-3
vc_MERS-CoV_2358	MERS-CoV	NC_019843.3	+	17919	18396	477	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2359	MERS-CoV	NC_019843.3	+	17919	20980	3061	0.209555358	4.0	orf1ab	Calu-3
vc_MERS-CoV_2360	MERS-CoV	NC_019843.3	+	17919	25904	7985	15.97859602	305.0	orf1ab;S;orf3;orf4a	Calu-3
vc_MERS-CoV_2361	MERS-CoV	NC_019843.3	-	18417	19331	914	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2362	MERS-CoV	NC_019843.3	+	18429	19348	919	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2363	MERS-CoV	NC_019843.3	-	18446	19715	1269	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2364	MERS-CoV	NC_019843.3	+	19227	19597	370	17.34070584	331.0	orf1ab	Calu-3
vc_MERS-CoV_2365	MERS-CoV	NC_019843.3	+	19227	19698	471	14.04020896	268.0	orf1ab	Calu-3
vc_MERS-CoV_2366	MERS-CoV	NC_019843.3	+	19227	20097	870	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2367	MERS-CoV	NC_019843.3	+	19243	19574	331	0.576277233	11.0	orf1ab	Calu-3
vc_MERS-CoV_2368	MERS-CoV	NC_019843.3	-	19417	19640	223	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2369	MERS-CoV	NC_019843.3	+	19506	19919	413	0.367159207	6.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2370	MERS-CoV	NC_019843.3	+	19506	20012	506	0.523888394	10.0	orf1ab	Calu-3
vc_MERS-CoV_2371	MERS-CoV	NC_019843.3	+	19506	27162	7656	20.32686969	388.0	orf1ab;S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_2372	MERS-CoV	NC_019843.3	-	19531	19715	184	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2373	MERS-CoV	NC_019843.3	-	19531	19977	446	9.482379931	181.0	NA	Calu-3
vc_MERS-CoV_2374	MERS-CoV	NC_019843.3	+	19575	19940	365	1.990775897	38.0	orf1ab	Calu-3
vc_MERS-CoV_2375	MERS-CoV	NC_019843.3	+	19575	19953	378	2.357497773	45.0	orf1ab	Calu-3
vc_MERS-CoV_2376	MERS-CoV	NC_019843.3	+	19575	20097	522	0.523888394	10.0	orf1ab	Calu-3
vc_MERS-CoV_2377	MERS-CoV	NC_019843.3	-	19608	19985	377	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2378	MERS-CoV	NC_019843.3	-	19608	20665	1057	19.12192638	365.0	NA	Calu-3
vc_MERS-CoV_2379	MERS-CoV	NC_019843.3	-	19641	19907	266	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2380	MERS-CoV	NC_019843.3	-	19641	20009	368	1.309720985	25.0	NA	Calu-3
vc_MERS-CoV_2381	MERS-CoV	NC_019843.3	-	19641	20411	770	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_2382	MERS-CoV	NC_019843.3	-	19641	20423	782	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2383	MERS-CoV	NC_019843.3	+	20065	20575	510	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2384	MERS-CoV	NC_019843.3	+	20195	20800	605	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2385	MERS-CoV	NC_019843.3	+	20346	20659	313	0.139995126	2.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2386	MERS-CoV	NC_019843.3	-	20495	20930	435	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2387	MERS-CoV	NC_019843.3	-	20495	21088	593	2.186221177	34.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2388	MERS-CoV	NC_019843.3	+	20513	20980	467	0.523888394	10.0	orf1ab	Calu-3
vc_MERS-CoV_2389	MERS-CoV	NC_019843.3	+	20513	21438	925	0.104777679	2.0	orf1ab	Calu-3
vc_MERS-CoV_2390	MERS-CoV	NC_019843.3	+	20513	25798	5285	3.562441079	68.0	orf1ab;S;orf3	Calu-3
vc_MERS-CoV_2391	MERS-CoV	NC_019843.3	+	20522	20800	278	0.261944197	5.0	orf1ab	Calu-3
vc_MERS-CoV_2392	MERS-CoV	NC_019843.3	+	20522	20913	391	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2393	MERS-CoV	NC_019843.3	+	20522	20945	423	0.656172485	9.5	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2394	MERS-CoV	NC_019843.3	+	20522	20947	425	0.523888394	10.0	orf1ab	Calu-3
vc_MERS-CoV_2395	MERS-CoV	NC_019843.3	+	20522	20980	458	0.857142146	13.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2396	MERS-CoV	NC_019843.3	+	20522	21016	494	0.628666073	12.0	orf1ab	Calu-3
vc_MERS-CoV_2397	MERS-CoV	NC_019843.3	+	20522	21469	947	0.83822143	16.0	orf1ab;S	Calu-3
vc_MERS-CoV_2398	MERS-CoV	NC_019843.3	+	20576	20913	337	0.367596538	5.0	orf1ab	Calu-3;Calu-3
vc_MERS-CoV_2399	MERS-CoV	NC_019843.3	-	20584	20837	253	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2400	MERS-CoV	NC_019843.3	-	20584	20930	346	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2401	MERS-CoV	NC_019843.3	-	20584	21082	498	1.047776788	20.0	NA	Calu-3
vc_MERS-CoV_2402	MERS-CoV	NC_019843.3	-	20584	21379	795	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2403	MERS-CoV	NC_019843.3	-	20584	27135	6551	24.09886612	460.0	NA	Calu-3
vc_MERS-CoV_2404	MERS-CoV	NC_019843.3	-	20622	21008	386	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2405	MERS-CoV	NC_019843.3	-	20622	21082	460	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2406	MERS-CoV	NC_019843.3	-	20666	21008	342	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2407	MERS-CoV	NC_019843.3	-	20666	21582	916	2.61944197	50.0	NA	Calu-3
vc_MERS-CoV_2408	MERS-CoV	NC_019843.3	-	20666	29204	8538	2.043164736	39.0	NA	Calu-3
vc_MERS-CoV_2409	MERS-CoV	NC_019843.3	-	20726	21048	322	1.309720985	25.0	NA	Calu-3
vc_MERS-CoV_2410	MERS-CoV	NC_019843.3	-	20726	21088	362	1.204943306	23.0	NA	Calu-3
vc_MERS-CoV_2411	MERS-CoV	NC_019843.3	-	20848	21217	369	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2412	MERS-CoV	NC_019843.3	+	20853	21224	371	0.157166518	3.0	orf1ab	Calu-3
vc_MERS-CoV_2413	MERS-CoV	NC_019843.3	+	21225	21438	213	0.733443752	14.0	orf1ab	Calu-3
vc_MERS-CoV_2414	MERS-CoV	NC_019843.3	+	21225	21469	244	0.681054912	13.0	orf1ab;S	Calu-3
vc_MERS-CoV_2415	MERS-CoV	NC_019843.3	+	21469	21672	203	0.523888394	10.0	orf1ab;S	Calu-3
vc_MERS-CoV_2416	MERS-CoV	NC_019843.3	-	21496	21870	374	0.227601412	3.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2417	MERS-CoV	NC_019843.3	+	21502	22239	737	0.209555358	4.0	orf1ab;S	Calu-3
vc_MERS-CoV_2418	MERS-CoV	NC_019843.3	-	21510	22168	658	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2419	MERS-CoV	NC_019843.3	+	21552	22439	887	4.033940633	77.0	S	Calu-3
vc_MERS-CoV_2420	MERS-CoV	NC_019843.3	+	21552	22728	1176	0.419110715	8.0	S	Calu-3
vc_MERS-CoV_2421	MERS-CoV	NC_019843.3	+	21552	24995	3443	24.2036438	462.0	S	Calu-3
vc_MERS-CoV_2422	MERS-CoV	NC_019843.3	-	21836	22247	411	1.257332146	24.0	NA	Calu-3
vc_MERS-CoV_2423	MERS-CoV	NC_019843.3	-	21872	22062	190	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2424	MERS-CoV	NC_019843.3	-	21877	22168	291	0.166189545	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2425	MERS-CoV	NC_019843.3	-	21959	22168	209	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2426	MERS-CoV	NC_019843.3	-	21989	22703	714	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2427	MERS-CoV	NC_019843.3	-	21989	22920	931	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2428	MERS-CoV	NC_019843.3	+	21998	22640	642	0.209555358	4.0	S	Calu-3
vc_MERS-CoV_2429	MERS-CoV	NC_019843.3	-	22061	22685	624	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2430	MERS-CoV	NC_019843.3	-	22073	22393	320	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2431	MERS-CoV	NC_019843.3	-	22159	25243	3084	1.204943306	23.0	NA	Calu-3
vc_MERS-CoV_2432	MERS-CoV	NC_019843.3	-	22164	22916	752	0.89061027	17.0	NA	Calu-3
vc_MERS-CoV_2433	MERS-CoV	NC_019843.3	-	22169	22390	221	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2434	MERS-CoV	NC_019843.3	-	22169	22697	528	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2435	MERS-CoV	NC_019843.3	-	22169	26703	4534	3.929162955	75.0	NA	Calu-3
vc_MERS-CoV_2436	MERS-CoV	NC_019843.3	+	22240	22426	186	0.576277233	11.0	S	Calu-3
vc_MERS-CoV_2437	MERS-CoV	NC_019843.3	+	22240	22532	292	0.314333036	6.0	S	Calu-3
vc_MERS-CoV_2438	MERS-CoV	NC_019843.3	+	22240	23033	793	3.090941524	59.0	S	Calu-3
vc_MERS-CoV_2439	MERS-CoV	NC_019843.3	-	22248	22870	622	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2440	MERS-CoV	NC_019843.3	-	22304	22548	244	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2441	MERS-CoV	NC_019843.3	-	22304	22920	616	1.257332146	24.0	NA	Calu-3
vc_MERS-CoV_2442	MERS-CoV	NC_019843.3	-	22304	22965	661	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2443	MERS-CoV	NC_019843.3	-	22304	22970	666	2.982826118	44.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2444	MERS-CoV	NC_019843.3	-	22304	22973	669	4.389176416	70.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2445	MERS-CoV	NC_019843.3	-	22564	22789	225	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2446	MERS-CoV	NC_019843.3	-	22564	22923	359	2.956194368	45.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2447	MERS-CoV	NC_019843.3	-	22564	22965	401	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2448	MERS-CoV	NC_019843.3	-	22564	22998	434	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2449	MERS-CoV	NC_019843.3	-	22564	23013	449	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2450	MERS-CoV	NC_019843.3	-	22564	23133	569	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2451	MERS-CoV	NC_019843.3	-	22564	23583	1019	1.100165627	21.0	NA	Calu-3
vc_MERS-CoV_2452	MERS-CoV	NC_019843.3	-	22564	23645	1081	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2453	MERS-CoV	NC_019843.3	-	22564	23657	1093	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2454	MERS-CoV	NC_019843.3	+	22594	22764	170	0.471499555	9.0	S	Calu-3
vc_MERS-CoV_2455	MERS-CoV	NC_019843.3	+	22594	22830	236	0.236187108	3.5	S	Calu-3;Calu-3
vc_MERS-CoV_2456	MERS-CoV	NC_019843.3	+	22594	22968	374	2.147942415	41.0	S	Calu-3
vc_MERS-CoV_2457	MERS-CoV	NC_019843.3	+	22594	22986	392	2.300896544	33.5	S	Calu-3;Calu-3
vc_MERS-CoV_2458	MERS-CoV	NC_019843.3	+	22594	23006	412	0.733443752	14.0	S	Calu-3
vc_MERS-CoV_2459	MERS-CoV	NC_019843.3	+	22594	23403	809	1.309720985	25.0	S	Calu-3
vc_MERS-CoV_2460	MERS-CoV	NC_019843.3	-	22615	22789	174	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2461	MERS-CoV	NC_019843.3	-	22615	22802	187	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2462	MERS-CoV	NC_019843.3	-	22615	22875	260	0.323793395	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2463	MERS-CoV	NC_019843.3	-	22615	22937	322	0.89061027	17.0	NA	Calu-3
vc_MERS-CoV_2464	MERS-CoV	NC_019843.3	-	22615	22963	348	4.452774936	65.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2465	MERS-CoV	NC_019843.3	-	22631	22970	339	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2466	MERS-CoV	NC_019843.3	-	22633	22916	283	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2467	MERS-CoV	NC_019843.3	-	22633	22998	365	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2468	MERS-CoV	NC_019843.3	+	22641	22904	263	0.79573028	12.5	S	Calu-3;Calu-3
vc_MERS-CoV_2469	MERS-CoV	NC_019843.3	+	22641	23033	392	0.314333036	6.0	S	Calu-3
vc_MERS-CoV_2470	MERS-CoV	NC_019843.3	-	22670	22998	328	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2471	MERS-CoV	NC_019843.3	-	22691	22908	217	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2472	MERS-CoV	NC_019843.3	-	22691	22923	232	1.466887503	28.0	NA	Calu-3
vc_MERS-CoV_2473	MERS-CoV	NC_019843.3	-	22691	22935	244	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2474	MERS-CoV	NC_019843.3	-	22691	22973	282	2.020031632	31.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2475	MERS-CoV	NC_019843.3	-	22727	22977	250	1.938387058	37.0	NA	Calu-3
vc_MERS-CoV_2476	MERS-CoV	NC_019843.3	-	22764	22916	152	0.288575947	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2477	MERS-CoV	NC_019843.3	-	22764	22935	171	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2478	MERS-CoV	NC_019843.3	-	22764	23029	265	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2479	MERS-CoV	NC_019843.3	-	22764	23091	327	4.775256338	73.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2480	MERS-CoV	NC_019843.3	-	22764	23247	483	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2481	MERS-CoV	NC_019843.3	-	22764	23440	676	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2482	MERS-CoV	NC_019843.3	-	22791	22977	186	1.058549138	15.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2483	MERS-CoV	NC_019843.3	-	22800	22977	177	0.995387949	19.0	NA	Calu-3
vc_MERS-CoV_2484	MERS-CoV	NC_019843.3	-	22800	25243	2443	13.45189281	204.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2485	MERS-CoV	NC_019843.3	-	22867	23664	797	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2486	MERS-CoV	NC_019843.3	+	22900	23298	398	0.261944197	5.0	S	Calu-3
vc_MERS-CoV_2487	MERS-CoV	NC_019843.3	-	22917	23502	585	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2488	MERS-CoV	NC_019843.3	-	22917	23655	738	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2489	MERS-CoV	NC_019843.3	-	22917	23709	792	0.183798269	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2490	MERS-CoV	NC_019843.3	-	22917	23742	825	2.095553576	40.0	NA	Calu-3
vc_MERS-CoV_2491	MERS-CoV	NC_019843.3	-	22917	24662	1745	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2492	MERS-CoV	NC_019843.3	-	22917	24693	1776	1.885998218	36.0	NA	Calu-3
vc_MERS-CoV_2493	MERS-CoV	NC_019843.3	-	22922	23583	661	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2494	MERS-CoV	NC_019843.3	-	22931	25951	3020	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2495	MERS-CoV	NC_019843.3	-	22947	23559	612	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2496	MERS-CoV	NC_019843.3	-	22999	23245	246	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2497	MERS-CoV	NC_019843.3	-	22999	23276	277	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2498	MERS-CoV	NC_019843.3	-	22999	23559	560	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2499	MERS-CoV	NC_019843.3	-	22999	23645	646	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2500	MERS-CoV	NC_019843.3	+	23004	23325	321	0.104777679	2.0	S	Calu-3
vc_MERS-CoV_2501	MERS-CoV	NC_019843.3	+	23104	23285	181	0.209555358	4.0	S	Calu-3
vc_MERS-CoV_2502	MERS-CoV	NC_019843.3	+	23104	23423	319	0.323793395	4.5	S	Calu-3;Calu-3
vc_MERS-CoV_2503	MERS-CoV	NC_019843.3	+	23326	23585	259	0.83822143	16.0	S	Calu-3
vc_MERS-CoV_2504	MERS-CoV	NC_019843.3	+	23326	23592	266	0.681054912	13.0	S	Calu-3
vc_MERS-CoV_2505	MERS-CoV	NC_019843.3	-	23584	23805	221	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2506	MERS-CoV	NC_019843.3	-	23584	26000	2416	1.7288317	33.0	NA	Calu-3
vc_MERS-CoV_2507	MERS-CoV	NC_019843.3	+	24046	24698	652	0.942999109	18.0	S	Calu-3
vc_MERS-CoV_2508	MERS-CoV	NC_019843.3	+	24119	24588	469	0.209555358	4.0	S	Calu-3
vc_MERS-CoV_2509	MERS-CoV	NC_019843.3	+	24178	24713	535	0.261944197	5.0	S	Calu-3
vc_MERS-CoV_2510	MERS-CoV	NC_019843.3	+	24178	24717	539	1.571665182	30.0	S	Calu-3
vc_MERS-CoV_2511	MERS-CoV	NC_019843.3	+	24178	27122	2944	56.89427958	1086.0	S;orf3;orf4a;orf4b;orf5	Calu-3
vc_MERS-CoV_2512	MERS-CoV	NC_019843.3	-	24299	25194	895	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2513	MERS-CoV	NC_019843.3	+	24420	25252	832	2.200331255	42.0	S	Calu-3
vc_MERS-CoV_2514	MERS-CoV	NC_019843.3	+	24465	25079	614	0.104777679	2.0	S	Calu-3
vc_MERS-CoV_2515	MERS-CoV	NC_019843.3	-	24494	25027	533	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2516	MERS-CoV	NC_019843.3	-	24494	25098	604	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2517	MERS-CoV	NC_019843.3	-	24664	25027	363	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2518	MERS-CoV	NC_019843.3	-	24683	25048	365	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2519	MERS-CoV	NC_019843.3	-	24861	25052	191	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2520	MERS-CoV	NC_019843.3	-	24861	25194	333	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2521	MERS-CoV	NC_019843.3	-	24891	25106	215	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2522	MERS-CoV	NC_019843.3	-	24891	25739	848	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2523	MERS-CoV	NC_019843.3	-	24894	25238	344	1.204943306	23.0	NA	Calu-3
vc_MERS-CoV_2524	MERS-CoV	NC_019843.3	-	24936	25121	185	1.519276342	29.0	NA	Calu-3
vc_MERS-CoV_2525	MERS-CoV	NC_019843.3	-	24969	25579	610	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2526	MERS-CoV	NC_019843.3	-	24987	25238	251	9.901490646	189.0	NA	Calu-3
vc_MERS-CoV_2527	MERS-CoV	NC_019843.3	-	24989	25238	249	1.356148113	19.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2528	MERS-CoV	NC_019843.3	+	24992	25564	572	0.647586788	9.0	S;orf3	Calu-3;Calu-3
vc_MERS-CoV_2529	MERS-CoV	NC_019843.3	+	24992	25585	593	0.209555358	4.0	S;orf3	Calu-3
vc_MERS-CoV_2530	MERS-CoV	NC_019843.3	-	25016	25616	600	0.691389932	9.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2531	MERS-CoV	NC_019843.3	-	25036	25301	265	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2532	MERS-CoV	NC_019843.3	-	25036	25553	517	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2533	MERS-CoV	NC_019843.3	-	25049	25224	175	0.46378852	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2534	MERS-CoV	NC_019843.3	-	25049	25232	183	1.066697504	17.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2535	MERS-CoV	NC_019843.3	-	25049	25280	231	0.349987814	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2536	MERS-CoV	NC_019843.3	-	25049	25301	252	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2537	MERS-CoV	NC_019843.3	-	25049	25323	274	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2538	MERS-CoV	NC_019843.3	-	25049	25553	504	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2539	MERS-CoV	NC_019843.3	-	25049	25787	738	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2540	MERS-CoV	NC_019843.3	+	25065	25359	294	0.157166518	3.0	S	Calu-3
vc_MERS-CoV_2541	MERS-CoV	NC_019843.3	-	25089	25616	527	0.785832591	15.0	NA	Calu-3
vc_MERS-CoV_2542	MERS-CoV	NC_019843.3	-	25095	25616	521	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2543	MERS-CoV	NC_019843.3	-	25187	25909	722	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2544	MERS-CoV	NC_019843.3	-	25195	25513	318	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_2545	MERS-CoV	NC_019843.3	-	25195	25525	330	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2546	MERS-CoV	NC_019843.3	-	25195	25557	362	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2547	MERS-CoV	NC_019843.3	-	25195	25575	380	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2548	MERS-CoV	NC_019843.3	-	25195	25579	384	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2549	MERS-CoV	NC_019843.3	-	25195	25830	635	1.938387058	37.0	NA	Calu-3
vc_MERS-CoV_2550	MERS-CoV	NC_019843.3	-	25195	25849	654	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2551	MERS-CoV	NC_019843.3	-	25195	25909	714	1.519276342	29.0	NA	Calu-3
vc_MERS-CoV_2552	MERS-CoV	NC_019843.3	-	25195	25912	717	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2553	MERS-CoV	NC_019843.3	-	25195	26855	1660	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2554	MERS-CoV	NC_019843.3	-	25226	25579	353	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2555	MERS-CoV	NC_019843.3	-	25234	25951	717	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2556	MERS-CoV	NC_019843.3	-	25244	25579	335	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2557	MERS-CoV	NC_019843.3	-	25244	25676	432	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_2558	MERS-CoV	NC_019843.3	-	25244	28698	3454	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_2559	MERS-CoV	NC_019843.3	-	25302	25608	306	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2560	MERS-CoV	NC_019843.3	-	25302	25787	485	1.100165627	21.0	NA	Calu-3
vc_MERS-CoV_2561	MERS-CoV	NC_019843.3	-	25302	25909	607	1.466887503	28.0	NA	Calu-3
vc_MERS-CoV_2562	MERS-CoV	NC_019843.3	-	25350	25596	246	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2563	MERS-CoV	NC_019843.3	-	25434	25596	162	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2564	MERS-CoV	NC_019843.3	-	25476	25893	417	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2565	MERS-CoV	NC_019843.3	-	25485	25721	236	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2566	MERS-CoV	NC_019843.3	-	25488	25927	439	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2567	MERS-CoV	NC_019843.3	+	25503	25807	304	1.571665182	30.0	S;orf3	Calu-3
vc_MERS-CoV_2568	MERS-CoV	NC_019843.3	+	25503	25826	323	0.89061027	17.0	S;orf3	Calu-3
vc_MERS-CoV_2569	MERS-CoV	NC_019843.3	+	25503	25862	359	1.152554467	22.0	S;orf3;orf4a	Calu-3
vc_MERS-CoV_2570	MERS-CoV	NC_019843.3	+	25503	25943	440	0.157166518	3.0	S;orf3;orf4a	Calu-3
vc_MERS-CoV_2571	MERS-CoV	NC_019843.3	-	25527	26023	496	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2572	MERS-CoV	NC_019843.3	-	25548	25898	350	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2573	MERS-CoV	NC_019843.3	-	25548	25912	364	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2574	MERS-CoV	NC_019843.3	-	25591	25787	196	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2575	MERS-CoV	NC_019843.3	-	25591	25864	273	2.200331255	42.0	NA	Calu-3
vc_MERS-CoV_2576	MERS-CoV	NC_019843.3	-	25591	26000	409	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2577	MERS-CoV	NC_019843.3	-	25605	25830	225	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2578	MERS-CoV	NC_019843.3	-	25605	25847	242	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2579	MERS-CoV	NC_019843.3	-	25605	25866	261	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2580	MERS-CoV	NC_019843.3	-	25605	25898	293	0.428571073	6.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2581	MERS-CoV	NC_019843.3	-	25617	26020	403	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2582	MERS-CoV	NC_019843.3	-	25617	26032	415	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2583	MERS-CoV	NC_019843.3	-	25617	26517	900	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2584	MERS-CoV	NC_019843.3	-	25617	26630	1013	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2585	MERS-CoV	NC_019843.3	-	25684	25951	267	0.577151895	9.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2586	MERS-CoV	NC_019843.3	-	25699	25893	194	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2587	MERS-CoV	NC_019843.3	-	25699	28732	3033	5.1864951	99.0	NA	Calu-3
vc_MERS-CoV_2588	MERS-CoV	NC_019843.3	-	25735	27051	1316	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2589	MERS-CoV	NC_019843.3	-	25792	26380	588	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2590	MERS-CoV	NC_019843.3	-	25797	27091	1294	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2591	MERS-CoV	NC_019843.3	-	25804	26000	196	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2592	MERS-CoV	NC_019843.3	-	25845	26847	1002	3.143330364	60.0	NA	Calu-3
vc_MERS-CoV_2593	MERS-CoV	NC_019843.3	-	25849	26000	151	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2594	MERS-CoV	NC_019843.3	-	25849	26020	171	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2595	MERS-CoV	NC_019843.3	-	25861	26478	617	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2596	MERS-CoV	NC_019843.3	-	25894	26118	224	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2597	MERS-CoV	NC_019843.3	-	25894	26335	441	0.900945289	13.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2598	MERS-CoV	NC_019843.3	-	25894	26357	463	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2599	MERS-CoV	NC_019843.3	-	25894	26500	606	4.023766533	60.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2600	MERS-CoV	NC_019843.3	-	25894	26738	844	2.56705313	49.0	NA	Calu-3
vc_MERS-CoV_2601	MERS-CoV	NC_019843.3	-	25894	26801	907	6.234271888	119.0	NA	Calu-3
vc_MERS-CoV_2602	MERS-CoV	NC_019843.3	-	25894	28861	2967	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2603	MERS-CoV	NC_019843.3	-	25904	26074	170	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2604	MERS-CoV	NC_019843.3	-	25904	26230	326	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2605	MERS-CoV	NC_019843.3	-	25904	26342	438	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2606	MERS-CoV	NC_019843.3	-	25904	26395	491	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2607	MERS-CoV	NC_019843.3	-	25914	26296	382	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2608	MERS-CoV	NC_019843.3	-	25914	26738	824	1.204943306	23.0	NA	Calu-3
vc_MERS-CoV_2609	MERS-CoV	NC_019843.3	-	25934	26342	408	5.815161173	111.0	NA	Calu-3
vc_MERS-CoV_2610	MERS-CoV	NC_019843.3	-	25952	26801	849	4.872162064	93.0	NA	Calu-3
vc_MERS-CoV_2611	MERS-CoV	NC_019843.3	-	25952	26891	939	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2612	MERS-CoV	NC_019843.3	-	25952	27688	1736	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2613	MERS-CoV	NC_019843.3	-	26016	26212	196	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2614	MERS-CoV	NC_019843.3	-	26037	26630	593	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2615	MERS-CoV	NC_019843.3	-	26054	26611	557	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2616	MERS-CoV	NC_019843.3	-	26087	26342	255	0.995387949	19.0	NA	Calu-3
vc_MERS-CoV_2617	MERS-CoV	NC_019843.3	-	26125	26296	171	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2618	MERS-CoV	NC_019843.3	-	26125	26319	194	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2619	MERS-CoV	NC_019843.3	-	26125	26395	270	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2620	MERS-CoV	NC_019843.3	-	26125	26757	632	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2621	MERS-CoV	NC_019843.3	-	26125	27058	933	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2622	MERS-CoV	NC_019843.3	-	26125	27091	966	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2623	MERS-CoV	NC_019843.3	-	26134	26395	261	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_2624	MERS-CoV	NC_019843.3	-	26134	26517	383	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2625	MERS-CoV	NC_019843.3	-	26179	26380	201	0.942999109	18.0	NA	Calu-3
vc_MERS-CoV_2626	MERS-CoV	NC_019843.3	-	26195	26757	562	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2627	MERS-CoV	NC_019843.3	-	26195	26847	652	1.257332146	24.0	NA	Calu-3
vc_MERS-CoV_2628	MERS-CoV	NC_019843.3	-	26231	26573	342	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2629	MERS-CoV	NC_019843.3	-	26231	26611	380	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2630	MERS-CoV	NC_019843.3	-	26231	26675	444	0.166189545	2.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2631	MERS-CoV	NC_019843.3	-	26231	26837	606	1.093329254	16.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2632	MERS-CoV	NC_019843.3	-	26231	26912	681	2.334364668	37.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2633	MERS-CoV	NC_019843.3	-	26231	26952	721	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2634	MERS-CoV	NC_019843.3	-	26231	27051	820	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2635	MERS-CoV	NC_019843.3	-	26231	27254	1023	2.724219649	52.0	NA	Calu-3
vc_MERS-CoV_2636	MERS-CoV	NC_019843.3	-	26231	27306	1075	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2637	MERS-CoV	NC_019843.3	-	26231	27812	1581	0.83822143	16.0	NA	Calu-3
vc_MERS-CoV_2638	MERS-CoV	NC_019843.3	-	26231	28203	1972	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2639	MERS-CoV	NC_019843.3	-	26250	26517	267	0.332379091	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2640	MERS-CoV	NC_019843.3	-	26250	26717	467	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2641	MERS-CoV	NC_019843.3	-	26250	27049	799	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2642	MERS-CoV	NC_019843.3	-	26272	26439	167	1.320930666	19.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2643	MERS-CoV	NC_019843.3	-	26272	26517	245	4.714995546	90.0	NA	Calu-3
vc_MERS-CoV_2644	MERS-CoV	NC_019843.3	-	26282	26517	235	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2645	MERS-CoV	NC_019843.3	-	26343	26546	203	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2646	MERS-CoV	NC_019843.3	-	26343	26590	247	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2647	MERS-CoV	NC_019843.3	-	26343	26801	458	43.23531527	671.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2648	MERS-CoV	NC_019843.3	-	26343	26843	500	2.011445936	31.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2649	MERS-CoV	NC_019843.3	-	26343	26912	569	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2650	MERS-CoV	NC_019843.3	-	26343	26992	649	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2651	MERS-CoV	NC_019843.3	-	26343	28861	2518	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2652	MERS-CoV	NC_019843.3	-	26358	26801	443	0.760950164	11.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2653	MERS-CoV	NC_019843.3	-	26358	26847	489	1.833609379	35.0	NA	Calu-3
vc_MERS-CoV_2654	MERS-CoV	NC_019843.3	-	26358	29947	3589	0.89061027	17.0	NA	Calu-3
vc_MERS-CoV_2655	MERS-CoV	NC_019843.3	-	26618	26891	273	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2656	MERS-CoV	NC_019843.3	-	26618	27058	440	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2657	MERS-CoV	NC_019843.3	-	26637	26855	218	6.600993764	126.0	NA	Calu-3
vc_MERS-CoV_2658	MERS-CoV	NC_019843.3	-	26664	27051	387	0.139995126	2.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2659	MERS-CoV	NC_019843.3	-	26664	27257	593	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2660	MERS-CoV	NC_019843.3	-	26664	27407	743	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2661	MERS-CoV	NC_019843.3	-	26677	27138	461	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2662	MERS-CoV	NC_019843.3	-	26677	27187	510	2.886196805	44.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2663	MERS-CoV	NC_019843.3	-	26677	27257	580	3.824385276	73.0	NA	Calu-3
vc_MERS-CoV_2664	MERS-CoV	NC_019843.3	-	26687	27058	371	1.309720985	25.0	NA	Calu-3
vc_MERS-CoV_2665	MERS-CoV	NC_019843.3	-	26687	27064	377	1.676442861	32.0	NA	Calu-3
vc_MERS-CoV_2666	MERS-CoV	NC_019843.3	-	26713	26912	199	2.200331255	42.0	NA	Calu-3
vc_MERS-CoV_2667	MERS-CoV	NC_019843.3	-	26713	27187	474	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2668	MERS-CoV	NC_019843.3	-	26717	28732	2015	7.80593707	149.0	NA	Calu-3
vc_MERS-CoV_2669	MERS-CoV	NC_019843.3	+	26751	27245	494	0.261944197	5.0	orf4b;orf5	Calu-3
vc_MERS-CoV_2670	MERS-CoV	NC_019843.3	+	26751	27250	499	0.209555358	4.0	orf4b;orf5	Calu-3
vc_MERS-CoV_2671	MERS-CoV	NC_019843.3	-	26817	27187	370	3.603343825	55.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2672	MERS-CoV	NC_019843.3	+	26826	27241	415	6.200090021	96.5	orf4b;orf5	Calu-3;Calu-3
vc_MERS-CoV_2673	MERS-CoV	NC_019843.3	-	26835	27187	352	0.866165173	12.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2674	MERS-CoV	NC_019843.3	-	26839	28088	1249	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2675	MERS-CoV	NC_019843.3	-	26868	27091	223	19.69820361	376.0	NA	Calu-3
vc_MERS-CoV_2676	MERS-CoV	NC_019843.3	+	26880	28178	1298	0.104777679	2.0	orf5;E;M	Calu-3
vc_MERS-CoV_2677	MERS-CoV	NC_019843.3	+	26886	27088	202	2.147942415	41.0	orf5	Calu-3
vc_MERS-CoV_2678	MERS-CoV	NC_019843.3	+	26886	27245	359	2.823910277	45.5	orf5	Calu-3;Calu-3
vc_MERS-CoV_2679	MERS-CoV	NC_019843.3	+	26886	27673	787	1.257332146	24.0	orf5;E	Calu-3
vc_MERS-CoV_2680	MERS-CoV	NC_019843.3	-	26917	27201	284	0.681054912	13.0	NA	Calu-3
vc_MERS-CoV_2681	MERS-CoV	NC_019843.3	-	26921	27187	266	0.471499555	9.0	NA	Calu-3
vc_MERS-CoV_2682	MERS-CoV	NC_019843.3	-	27019	27821	802	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2683	MERS-CoV	NC_019843.3	-	27074	27476	402	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2684	MERS-CoV	NC_019843.3	-	27445	27845	400	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2685	MERS-CoV	NC_019843.3	-	27530	27856	326	0.785832591	15.0	NA	Calu-3
vc_MERS-CoV_2686	MERS-CoV	NC_019843.3	-	27649	27821	172	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2687	MERS-CoV	NC_019843.3	-	27649	27992	343	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2688	MERS-CoV	NC_019843.3	+	27744	29921	2177	0.104777679	2.0	E;M;N;orf8b	Calu-3
vc_MERS-CoV_2689	MERS-CoV	NC_019843.3	-	27822	28017	195	0.332379091	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2690	MERS-CoV	NC_019843.3	-	27822	28165	343	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2691	MERS-CoV	NC_019843.3	-	28135	28500	365	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2692	MERS-CoV	NC_019843.3	-	28135	28590	455	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2693	MERS-CoV	NC_019843.3	-	28272	28732	460	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2694	MERS-CoV	NC_019843.3	-	28294	28727	433	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2695	MERS-CoV	NC_019843.3	-	28336	28687	351	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2696	MERS-CoV	NC_019843.3	-	28438	28703	265	15.97859602	305.0	NA	Calu-3
vc_MERS-CoV_2697	MERS-CoV	NC_019843.3	-	28438	28732	294	0.89061027	17.0	NA	Calu-3
vc_MERS-CoV_2698	MERS-CoV	NC_019843.3	+	28443	29602	1159	0.261944197	5.0	M;N;orf8b	Calu-3
vc_MERS-CoV_2699	MERS-CoV	NC_019843.3	+	28454	28650	196	7.503849294	115.0	M;N	Calu-3;Calu-3
vc_MERS-CoV_2700	MERS-CoV	NC_019843.3	+	28454	29189	735	2.200331255	42.0	M;N;orf8b	Calu-3
vc_MERS-CoV_2701	MERS-CoV	NC_019843.3	+	28454	29273	819	18.59803799	355.0	M;N;orf8b	Calu-3
vc_MERS-CoV_2702	MERS-CoV	NC_019843.3	+	28464	29351	887	0.104777679	2.0	M;N;orf8b	Calu-3
vc_MERS-CoV_2703	MERS-CoV	NC_019843.3	+	28526	29130	604	0.471499555	9.0	N;orf8b	Calu-3
vc_MERS-CoV_2704	MERS-CoV	NC_019843.3	-	28547	28687	140	0.785832591	15.0	NA	Calu-3
vc_MERS-CoV_2705	MERS-CoV	NC_019843.3	-	28585	29649	1064	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2706	MERS-CoV	NC_019843.3	-	28622	28864	242	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2707	MERS-CoV	NC_019843.3	-	28632	28844	212	3.090941524	59.0	NA	Calu-3
vc_MERS-CoV_2708	MERS-CoV	NC_019843.3	-	28632	28908	276	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2709	MERS-CoV	NC_019843.3	-	28632	28998	366	0.297598975	4.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2710	MERS-CoV	NC_019843.3	-	28632	29025	393	0.700412959	9.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2711	MERS-CoV	NC_019843.3	-	28632	29175	543	0.218578385	3.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2712	MERS-CoV	NC_019843.3	-	28632	29210	578	0.270967224	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2713	MERS-CoV	NC_019843.3	-	28632	29244	612	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2714	MERS-CoV	NC_019843.3	-	28632	29478	846	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2715	MERS-CoV	NC_019843.3	-	28632	29549	917	0.419110715	8.0	NA	Calu-3
vc_MERS-CoV_2716	MERS-CoV	NC_019843.3	-	28632	29615	983	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2717	MERS-CoV	NC_019843.3	-	28632	29649	1017	1.414498664	27.0	NA	Calu-3
vc_MERS-CoV_2718	MERS-CoV	NC_019843.3	-	28632	29947	1315	256.7577019	4901.0	NA	Calu-3
vc_MERS-CoV_2719	MERS-CoV	NC_019843.3	+	28642	29130	488	0.104777679	2.0	N;orf8b	Calu-3
vc_MERS-CoV_2720	MERS-CoV	NC_019843.3	+	28648	29022	374	0.157166518	3.0	N;orf8b	Calu-3
vc_MERS-CoV_2721	MERS-CoV	NC_019843.3	-	28651	28959	308	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2722	MERS-CoV	NC_019843.3	-	28666	29148	482	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2723	MERS-CoV	NC_019843.3	-	28675	28959	284	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2724	MERS-CoV	NC_019843.3	-	28675	29280	605	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2725	MERS-CoV	NC_019843.3	-	28675	29427	752	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2726	MERS-CoV	NC_019843.3	-	28683	29210	527	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2727	MERS-CoV	NC_019843.3	-	28685	29405	720	0.366721876	7.0	NA	Calu-3
vc_MERS-CoV_2728	MERS-CoV	NC_019843.3	-	28733	28983	250	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2729	MERS-CoV	NC_019843.3	-	28733	29107	374	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2730	MERS-CoV	NC_019843.3	-	28733	29466	733	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2731	MERS-CoV	NC_019843.3	-	28733	29538	805	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2732	MERS-CoV	NC_019843.3	-	28733	29545	812	5.081717421	97.0	NA	Calu-3
vc_MERS-CoV_2733	MERS-CoV	NC_019843.3	-	28741	28950	209	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2734	MERS-CoV	NC_019843.3	-	28741	29041	300	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2735	MERS-CoV	NC_019843.3	-	28741	29109	368	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2736	MERS-CoV	NC_019843.3	-	28741	29163	422	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2737	MERS-CoV	NC_019843.3	-	28741	29201	460	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2738	MERS-CoV	NC_019843.3	-	28741	29751	1010	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2739	MERS-CoV	NC_019843.3	-	28756	29118	362	0.306184671	4.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2740	MERS-CoV	NC_019843.3	-	28756	29201	445	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2741	MERS-CoV	NC_019843.3	-	28756	29295	539	0.209555358	4.0	NA	Calu-3
vc_MERS-CoV_2742	MERS-CoV	NC_019843.3	-	28756	29463	707	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2743	MERS-CoV	NC_019843.3	-	28775	29210	435	0.314333036	6.0	NA	Calu-3
vc_MERS-CoV_2744	MERS-CoV	NC_019843.3	+	28814	29130	316	0.104777679	2.0	N;orf8b	Calu-3
vc_MERS-CoV_2745	MERS-CoV	NC_019843.3	+	28856	29540	684	0.366721876	7.0	N;orf8b	Calu-3
vc_MERS-CoV_2746	MERS-CoV	NC_019843.3	+	28856	29766	910	0.681054912	13.0	N;orf8b	Calu-3
vc_MERS-CoV_2747	MERS-CoV	NC_019843.3	+	28856	29842	986	3.143330364	60.0	N;orf8b	Calu-3
vc_MERS-CoV_2748	MERS-CoV	NC_019843.3	-	28863	29148	285	1.938387058	37.0	NA	Calu-3
vc_MERS-CoV_2749	MERS-CoV	NC_019843.3	-	28874	29148	274	0.942999109	18.0	NA	Calu-3
vc_MERS-CoV_2750	MERS-CoV	NC_019843.3	-	28897	29163	266	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2751	MERS-CoV	NC_019843.3	+	28917	29130	213	0.366721876	7.0	N;orf8b	Calu-3
vc_MERS-CoV_2752	MERS-CoV	NC_019843.3	-	28989	29148	159	4.400662509	84.0	NA	Calu-3
vc_MERS-CoV_2753	MERS-CoV	NC_019843.3	-	28989	29210	221	0.995387949	19.0	NA	Calu-3
vc_MERS-CoV_2754	MERS-CoV	NC_019843.3	-	29049	29244	195	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2755	MERS-CoV	NC_019843.3	+	29102	29487	385	0.157166518	3.0	N	Calu-3
vc_MERS-CoV_2756	MERS-CoV	NC_019843.3	+	29131	29439	308	0.157166518	3.0	N	Calu-3
vc_MERS-CoV_2757	MERS-CoV	NC_019843.3	+	29131	29554	423	0.942999109	18.0	N	Calu-3
vc_MERS-CoV_2758	MERS-CoV	NC_019843.3	+	29131	29806	675	0.314333036	6.0	N	Calu-3
vc_MERS-CoV_2759	MERS-CoV	NC_019843.3	-	29148	29742	594	0.157166518	3.0	NA	Calu-3
vc_MERS-CoV_2760	MERS-CoV	NC_019843.3	-	29162	29998	836	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2761	MERS-CoV	NC_019843.3	+	29170	29340	170	0.157166518	3.0	N	Calu-3
vc_MERS-CoV_2762	MERS-CoV	NC_019843.3	+	29170	29475	305	0.104777679	2.0	N	Calu-3
vc_MERS-CoV_2763	MERS-CoV	NC_019843.3	+	29194	29733	539	0.157166518	3.0	N	Calu-3
vc_MERS-CoV_2764	MERS-CoV	NC_019843.3	+	29197	29602	405	10.59916413	164.0	N	Calu-3;Calu-3
vc_MERS-CoV_2765	MERS-CoV	NC_019843.3	+	29197	29605	408	0.83822143	16.0	N	Calu-3
vc_MERS-CoV_2766	MERS-CoV	NC_019843.3	+	29197	29760	563	0.104777679	2.0	N	Calu-3
vc_MERS-CoV_2767	MERS-CoV	NC_019843.3	+	29197	29766	569	1.362109824	26.0	N	Calu-3
vc_MERS-CoV_2768	MERS-CoV	NC_019843.3	+	29197	29899	702	0.681054912	13.0	N	Calu-3
vc_MERS-CoV_2769	MERS-CoV	NC_019843.3	-	29206	29545	339	6.129494209	117.0	NA	Calu-3
vc_MERS-CoV_2770	MERS-CoV	NC_019843.3	-	29206	29709	503	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2771	MERS-CoV	NC_019843.3	-	29206	29869	663	0.89061027	17.0	NA	Calu-3
vc_MERS-CoV_2772	MERS-CoV	NC_019843.3	-	29211	29538	327	0.733443752	14.0	NA	Calu-3
vc_MERS-CoV_2773	MERS-CoV	NC_019843.3	-	29211	29635	424	2.580449465	38.5	NA	Calu-3;Calu-3
vc_MERS-CoV_2774	MERS-CoV	NC_019843.3	-	29211	29775	564	0.576277233	11.0	NA	Calu-3
vc_MERS-CoV_2775	MERS-CoV	NC_019843.3	-	29211	29799	588	1.204943306	23.0	NA	Calu-3
vc_MERS-CoV_2776	MERS-CoV	NC_019843.3	-	29336	29998	662	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2777	MERS-CoV	NC_019843.3	-	29349	29635	286	1.571665182	30.0	NA	Calu-3
vc_MERS-CoV_2778	MERS-CoV	NC_019843.3	-	29385	29549	164	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2779	MERS-CoV	NC_019843.3	-	29385	29703	318	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2780	MERS-CoV	NC_019843.3	+	29391	29899	508	0.104777679	2.0	N	Calu-3
vc_MERS-CoV_2781	MERS-CoV	NC_019843.3	-	29397	29952	555	13.62109824	260.0	NA	Calu-3
vc_MERS-CoV_2782	MERS-CoV	NC_019843.3	+	29460	29605	145	3.038552685	58.0	N	Calu-3
vc_MERS-CoV_2783	MERS-CoV	NC_019843.3	-	29471	29703	232	2.147942415	41.0	NA	Calu-3
vc_MERS-CoV_2784	MERS-CoV	NC_019843.3	+	29477	29838	361	0.942999109	18.0	N	Calu-3
vc_MERS-CoV_2785	MERS-CoV	NC_019843.3	+	29477	29911	434	1.152554467	22.0	N	Calu-3
vc_MERS-CoV_2786	MERS-CoV	NC_019843.3	+	29477	29921	444	1.152554467	22.0	N	Calu-3
vc_MERS-CoV_2787	MERS-CoV	NC_019843.3	+	29477	29966	489	0.366721876	7.0	N	Calu-3
vc_MERS-CoV_2788	MERS-CoV	NC_019843.3	-	29510	29649	139	5.029328582	96.0	NA	Calu-3
vc_MERS-CoV_2789	MERS-CoV	NC_019843.3	-	29510	29812	302	0.628666073	12.0	NA	Calu-3
vc_MERS-CoV_2790	MERS-CoV	NC_019843.3	-	29510	29879	369	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2791	MERS-CoV	NC_019843.3	-	29510	30090	580	0.261944197	5.0	NA	Calu-3
vc_MERS-CoV_2792	MERS-CoV	NC_019843.3	+	29517	29818	301	0.157166518	3.0	N	Calu-3
vc_MERS-CoV_2793	MERS-CoV	NC_019843.3	-	29520	29947	427	0.523888394	10.0	NA	Calu-3
vc_MERS-CoV_2794	MERS-CoV	NC_019843.3	-	29547	29998	451	3.143330364	60.0	NA	Calu-3
vc_MERS-CoV_2795	MERS-CoV	NC_019843.3	-	29580	29879	299	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2796	MERS-CoV	NC_019843.3	-	29640	29859	219	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2797	MERS-CoV	NC_019843.3	-	29645	29799	154	0.332379091	5.0	NA	Calu-3;Calu-3
vc_MERS-CoV_2798	MERS-CoV	NC_019843.3	+	29658	29808	150	0.209555358	4.0	N	Calu-3
vc_MERS-CoV_2799	MERS-CoV	NC_019843.3	+	29658	29899	241	0.139995126	2.0	N	Calu-3;Calu-3
vc_MERS-CoV_2800	MERS-CoV	NC_019843.3	+	29664	29899	235	0.157166518	3.0	N	Calu-3
vc_MERS-CoV_2801	MERS-CoV	NC_019843.3	-	29677	29952	275	4.610217867	88.0	NA	Calu-3
vc_MERS-CoV_2802	MERS-CoV	NC_019843.3	-	29677	30090	413	0.104777679	2.0	NA	Calu-3
vc_MERS-CoV_2803	MERS-CoV	NC_019843.3	+	29734	29921	187	0.218578385	3.5	N	Calu-3;Calu-3
vc_MERS-CoV_2804	MERS-CoV	NC_019843.3	+	29734	29966	232	0.261944197	5.0	N	Calu-3
vc_MERS-CoV_2805	MERS-CoV	NC_019843.3	+	29734	30014	280	0.104777679	2.0	N	Calu-3
vc_MERS-CoV_2806	MERS-CoV	NC_019843.3	+	29734	30047	313	1.152554467	22.0	N	Calu-3
vc_MERS-CoV_2807	MERS-CoV	NC_019843.3	+	9	3467	3458	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_2808	MERS-CoV	NC_019843.3	+	9	25915	25906	0.438031431	5.0	orf1ab;S;orf3;orf4a	Calu-3
vc_MERS-CoV_2809	MERS-CoV	NC_019843.3	+	16	1874	1858	0.613244003	7.0	orf1ab	Calu-3
vc_MERS-CoV_2810	MERS-CoV	NC_019843.3	+	16	1917	1901	0.876062861	10.0	orf1ab	Calu-3
vc_MERS-CoV_2811	MERS-CoV	NC_019843.3	+	16	2654	2638	0.613244003	7.0	orf1ab	Calu-3
vc_MERS-CoV_2812	MERS-CoV	NC_019843.3	+	16	28225	28209	0.613244003	7.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_2813	MERS-CoV	NC_019843.3	-	65	524	459	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2814	MERS-CoV	NC_019843.3	-	193	545	352	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_2815	MERS-CoV	NC_019843.3	-	418	1231	813	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_2816	MERS-CoV	NC_019843.3	-	469	780	311	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2817	MERS-CoV	NC_019843.3	-	469	1228	759	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_2818	MERS-CoV	NC_019843.3	-	773	1205	432	0.525637717	6.0	NA	Calu-3
vc_MERS-CoV_2819	MERS-CoV	NC_019843.3	-	773	1231	458	1.664519437	19.0	NA	Calu-3
vc_MERS-CoV_2820	MERS-CoV	NC_019843.3	-	947	1198	251	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2821	MERS-CoV	NC_019843.3	-	1007	1220	213	2.540582298	29.0	NA	Calu-3
vc_MERS-CoV_2822	MERS-CoV	NC_019843.3	-	1056	28689	27633	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2823	MERS-CoV	NC_019843.3	-	1142	28732	27590	18.83535152	215.0	NA	Calu-3
vc_MERS-CoV_2824	MERS-CoV	NC_019843.3	-	1200	29148	27948	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2825	MERS-CoV	NC_019843.3	-	1229	2117	888	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_2826	MERS-CoV	NC_019843.3	-	1229	16699	15470	1.401700578	16.0	NA	Calu-3
vc_MERS-CoV_2827	MERS-CoV	NC_019843.3	-	1229	18264	17035	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2828	MERS-CoV	NC_019843.3	-	1229	29146	27917	4.730739451	54.0	NA	Calu-3
vc_MERS-CoV_2829	MERS-CoV	NC_019843.3	-	1229	29204	27975	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_2830	MERS-CoV	NC_019843.3	-	1229	29573	28344	2.803401156	32.0	NA	Calu-3
vc_MERS-CoV_2831	MERS-CoV	NC_019843.3	-	1229	29635	28406	1.927338295	22.0	NA	Calu-3
vc_MERS-CoV_2832	MERS-CoV	NC_019843.3	-	1229	29703	28474	1.927338295	22.0	NA	Calu-3
vc_MERS-CoV_2833	MERS-CoV	NC_019843.3	-	1262	2281	1019	3.329038873	38.0	NA	Calu-3
vc_MERS-CoV_2834	MERS-CoV	NC_019843.3	-	1262	28757	27495	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2835	MERS-CoV	NC_019843.3	-	1262	29635	28373	9.724297761	111.0	NA	Calu-3
vc_MERS-CoV_2836	MERS-CoV	NC_019843.3	+	1298	1628	330	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2837	MERS-CoV	NC_019843.3	+	1339	1702	363	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_2838	MERS-CoV	NC_019843.3	+	1339	29921	28582	0.262818858	3.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_2839	MERS-CoV	NC_019843.3	-	1370	2152	782	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2840	MERS-CoV	NC_019843.3	+	1449	29921	28472	1.314094292	15.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_2841	MERS-CoV	NC_019843.3	-	1503	16908	15405	2.014944581	23.0	NA	Calu-3
vc_MERS-CoV_2842	MERS-CoV	NC_019843.3	-	1503	29095	27592	14.89306864	170.0	NA	Calu-3
vc_MERS-CoV_2843	MERS-CoV	NC_019843.3	+	1594	1930	336	1.401700578	16.0	orf1ab	Calu-3
vc_MERS-CoV_2844	MERS-CoV	NC_019843.3	+	1594	6028	4434	11.21360463	128.0	orf1ab	Calu-3
vc_MERS-CoV_2845	MERS-CoV	NC_019843.3	-	1667	2148	481	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_2846	MERS-CoV	NC_019843.3	+	1683	1974	291	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2847	MERS-CoV	NC_019843.3	+	1683	10784	9101	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2848	MERS-CoV	NC_019843.3	+	1683	29540	27857	0.262818858	3.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_2849	MERS-CoV	NC_019843.3	+	1683	29542	27859	1.314094292	15.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_2850	MERS-CoV	NC_019843.3	-	1688	29210	27522	3.679464018	42.0	NA	Calu-3
vc_MERS-CoV_2851	MERS-CoV	NC_019843.3	-	1701	29210	27509	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2852	MERS-CoV	NC_019843.3	+	1722	1917	195	0.350425145	4.0	orf1ab	Calu-3
vc_MERS-CoV_2853	MERS-CoV	NC_019843.3	-	1787	2326	539	0.963669148	11.0	NA	Calu-3
vc_MERS-CoV_2854	MERS-CoV	NC_019843.3	-	1787	2337	550	0.788456575	9.0	NA	Calu-3
vc_MERS-CoV_2855	MERS-CoV	NC_019843.3	-	1790	3525	1735	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2856	MERS-CoV	NC_019843.3	+	1825	2302	477	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_2857	MERS-CoV	NC_019843.3	-	2005	2281	276	0.963669148	11.0	NA	Calu-3
vc_MERS-CoV_2858	MERS-CoV	NC_019843.3	-	2005	7803	5798	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_2859	MERS-CoV	NC_019843.3	-	2005	26342	24337	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2860	MERS-CoV	NC_019843.3	+	2031	29921	27890	14.63024978	167.0	orf1ab;S;orf3;orf4a;orf4b;orf5;E;M;N;orf8b	Calu-3
vc_MERS-CoV_2861	MERS-CoV	NC_019843.3	-	2055	2281	226	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2862	MERS-CoV	NC_019843.3	-	2153	2946	793	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2863	MERS-CoV	NC_019843.3	-	2153	2949	796	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_2864	MERS-CoV	NC_019843.3	-	2153	29160	27007	1.489306864	17.0	NA	Calu-3
vc_MERS-CoV_2865	MERS-CoV	NC_019843.3	-	2153	29175	27022	9.811904047	112.0	NA	Calu-3
vc_MERS-CoV_2866	MERS-CoV	NC_019843.3	-	2153	29947	27794	216.3875268	2470.0	NA	Calu-3
vc_MERS-CoV_2867	MERS-CoV	NC_019843.3	-	2204	29210	27006	1.401700578	16.0	NA	Calu-3
vc_MERS-CoV_2868	MERS-CoV	NC_019843.3	-	2213	29210	26997	1.489306864	17.0	NA	Calu-3
vc_MERS-CoV_2869	MERS-CoV	NC_019843.3	+	2245	2715	470	1.489306864	17.0	orf1ab	Calu-3
vc_MERS-CoV_2870	MERS-CoV	NC_019843.3	-	2249	28732	26483	6.482865174	74.0	NA	Calu-3
vc_MERS-CoV_2871	MERS-CoV	NC_019843.3	-	2264	29210	26946	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2872	MERS-CoV	NC_019843.3	-	2273	2619	346	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2873	MERS-CoV	NC_019843.3	-	2339	2619	280	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2874	MERS-CoV	NC_019843.3	-	2510	2779	269	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2875	MERS-CoV	NC_019843.3	-	2548	2949	401	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2876	MERS-CoV	NC_019843.3	-	2663	3025	362	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2877	MERS-CoV	NC_019843.3	+	2716	2986	270	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2878	MERS-CoV	NC_019843.3	+	2963	3660	697	0.438031431	5.0	orf1ab	Calu-3
vc_MERS-CoV_2879	MERS-CoV	NC_019843.3	-	2966	3529	563	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2880	MERS-CoV	NC_019843.3	-	2966	25813	22847	8.585416041	98.0	NA	Calu-3
vc_MERS-CoV_2881	MERS-CoV	NC_019843.3	-	2966	28703	25737	10.24993548	117.0	NA	Calu-3
vc_MERS-CoV_2882	MERS-CoV	NC_019843.3	+	3220	3377	157	0.700850289	8.0	orf1ab	Calu-3
vc_MERS-CoV_2883	MERS-CoV	NC_019843.3	-	3419	3606	187	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2884	MERS-CoV	NC_019843.3	-	3419	28687	25268	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2885	MERS-CoV	NC_019843.3	+	3510	5919	2409	3.416645159	39.0	orf1ab	Calu-3
vc_MERS-CoV_2886	MERS-CoV	NC_019843.3	-	3526	4203	677	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2887	MERS-CoV	NC_019843.3	-	3526	26380	22854	3.241432587	37.0	NA	Calu-3
vc_MERS-CoV_2888	MERS-CoV	NC_019843.3	-	3574	4203	629	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2889	MERS-CoV	NC_019843.3	-	3574	29635	26061	4.730739451	54.0	NA	Calu-3
vc_MERS-CoV_2890	MERS-CoV	NC_019843.3	-	4178	22920	18742	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_2891	MERS-CoV	NC_019843.3	-	4259	5112	853	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_2892	MERS-CoV	NC_019843.3	+	4306	4830	524	1.13888172	13.0	orf1ab	Calu-3
vc_MERS-CoV_2893	MERS-CoV	NC_019843.3	+	4381	8265	3884	11.91445491	136.0	orf1ab	Calu-3
vc_MERS-CoV_2894	MERS-CoV	NC_019843.3	+	4441	4634	193	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_2895	MERS-CoV	NC_019843.3	+	4441	11595	7154	5.694408599	65.0	orf1ab	Calu-3
vc_MERS-CoV_2896	MERS-CoV	NC_019843.3	+	4593	21672	17079	0.876062861	10.0	orf1ab;S	Calu-3
vc_MERS-CoV_2897	MERS-CoV	NC_019843.3	-	4848	5057	209	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_2898	MERS-CoV	NC_019843.3	-	4850	5112	262	2.27776344	26.0	NA	Calu-3
vc_MERS-CoV_2899	MERS-CoV	NC_019843.3	-	4878	5117	239	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2900	MERS-CoV	NC_019843.3	-	4878	5953	1075	9.023447472	103.0	NA	Calu-3
vc_MERS-CoV_2901	MERS-CoV	NC_019843.3	-	4896	5181	285	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_2902	MERS-CoV	NC_019843.3	-	5390	5738	348	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2903	MERS-CoV	NC_019843.3	-	5492	5770	278	1.226488006	14.0	NA	Calu-3
vc_MERS-CoV_2904	MERS-CoV	NC_019843.3	-	5492	11479	5987	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_2905	MERS-CoV	NC_019843.3	+	5626	6875	1249	5.694408599	65.0	orf1ab	Calu-3
vc_MERS-CoV_2906	MERS-CoV	NC_019843.3	+	5640	5927	287	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_2907	MERS-CoV	NC_019843.3	-	5653	6156	503	1.57691315	18.0	NA	Calu-3
vc_MERS-CoV_2908	MERS-CoV	NC_019843.3	-	5695	6156	461	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2909	MERS-CoV	NC_019843.3	+	5727	5908	181	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2910	MERS-CoV	NC_019843.3	-	5901	6693	792	0.788456575	9.0	NA	Calu-3
vc_MERS-CoV_2911	MERS-CoV	NC_019843.3	-	5901	6942	1041	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2912	MERS-CoV	NC_019843.3	+	5908	16403	10495	15.33110007	175.0	orf1ab	Calu-3
vc_MERS-CoV_2913	MERS-CoV	NC_019843.3	-	6157	8030	1873	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_2914	MERS-CoV	NC_019843.3	-	6157	11202	5045	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2915	MERS-CoV	NC_019843.3	-	6157	22916	16759	8.147384611	93.0	NA	Calu-3
vc_MERS-CoV_2916	MERS-CoV	NC_019843.3	-	6157	29635	23478	4.292708021	49.0	NA	Calu-3
vc_MERS-CoV_2917	MERS-CoV	NC_019843.3	-	6256	6957	701	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_2918	MERS-CoV	NC_019843.3	-	6256	7813	1557	12.96573035	148.0	NA	Calu-3
vc_MERS-CoV_2919	MERS-CoV	NC_019843.3	-	6391	6947	556	1.489306864	17.0	NA	Calu-3
vc_MERS-CoV_2920	MERS-CoV	NC_019843.3	+	6427	6833	406	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2921	MERS-CoV	NC_019843.3	+	6427	6972	545	0.525637717	6.0	orf1ab	Calu-3
vc_MERS-CoV_2922	MERS-CoV	NC_019843.3	+	6427	14864	8437	1.314094292	15.0	orf1ab	Calu-3
vc_MERS-CoV_2923	MERS-CoV	NC_019843.3	+	6547	6713	166	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2924	MERS-CoV	NC_019843.3	-	6587	6947	360	1.401700578	16.0	NA	Calu-3
vc_MERS-CoV_2925	MERS-CoV	NC_019843.3	-	6651	7183	532	5.43158974	62.0	NA	Calu-3
vc_MERS-CoV_2926	MERS-CoV	NC_019843.3	-	6651	12094	5443	1.051275434	12.0	NA	Calu-3
vc_MERS-CoV_2927	MERS-CoV	NC_019843.3	+	6681	6912	231	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_2928	MERS-CoV	NC_019843.3	+	6681	7097	416	0.350425145	4.0	orf1ab	Calu-3
vc_MERS-CoV_2929	MERS-CoV	NC_019843.3	+	6681	26236	19555	1.226488006	14.0	orf1ab;S;orf3;orf4a;orf4b	Calu-3
vc_MERS-CoV_2930	MERS-CoV	NC_019843.3	+	6721	6922	201	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2931	MERS-CoV	NC_019843.3	+	6721	7007	286	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2932	MERS-CoV	NC_019843.3	+	6721	7999	1278	1.401700578	16.0	orf1ab	Calu-3
vc_MERS-CoV_2933	MERS-CoV	NC_019843.3	+	6876	8306	1430	17.6964698	202.0	orf1ab	Calu-3
vc_MERS-CoV_2934	MERS-CoV	NC_019843.3	+	6913	7369	456	1.927338295	22.0	orf1ab	Calu-3
vc_MERS-CoV_2935	MERS-CoV	NC_019843.3	+	6913	7392	479	1.314094292	15.0	orf1ab	Calu-3
vc_MERS-CoV_2936	MERS-CoV	NC_019843.3	+	6913	22213	15300	26.5447047	303.0	orf1ab;S	Calu-3
vc_MERS-CoV_2937	MERS-CoV	NC_019843.3	-	6948	7177	229	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2938	MERS-CoV	NC_019843.3	-	7016	7888	872	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_2939	MERS-CoV	NC_019843.3	+	7061	7342	281	0.700850289	8.0	orf1ab	Calu-3
vc_MERS-CoV_2940	MERS-CoV	NC_019843.3	-	7269	8601	1332	1.57691315	18.0	NA	Calu-3
vc_MERS-CoV_2941	MERS-CoV	NC_019843.3	-	7574	7794	220	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2942	MERS-CoV	NC_019843.3	-	7670	7929	259	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2943	MERS-CoV	NC_019843.3	-	7710	7904	194	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2944	MERS-CoV	NC_019843.3	-	7717	7929	212	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2945	MERS-CoV	NC_019843.3	-	7751	7904	153	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2946	MERS-CoV	NC_019843.3	+	7779	7999	220	1.13888172	13.0	orf1ab	Calu-3
vc_MERS-CoV_2947	MERS-CoV	NC_019843.3	+	7779	25784	18005	0.438031431	5.0	orf1ab;S;orf3	Calu-3
vc_MERS-CoV_2948	MERS-CoV	NC_019843.3	-	7796	8035	239	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2949	MERS-CoV	NC_019843.3	+	8107	8265	158	0.438031431	5.0	orf1ab	Calu-3
vc_MERS-CoV_2950	MERS-CoV	NC_019843.3	-	8110	8969	859	8.760628614	100.0	NA	Calu-3
vc_MERS-CoV_2951	MERS-CoV	NC_019843.3	-	8110	27814	19704	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2952	MERS-CoV	NC_019843.3	-	8110	28757	20647	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2953	MERS-CoV	NC_019843.3	-	8191	9517	1326	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2954	MERS-CoV	NC_019843.3	-	8224	9517	1293	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2955	MERS-CoV	NC_019843.3	-	8602	8914	312	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2956	MERS-CoV	NC_019843.3	-	8602	9164	562	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2957	MERS-CoV	NC_019843.3	-	8620	8895	275	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2958	MERS-CoV	NC_019843.3	-	8843	9517	674	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2959	MERS-CoV	NC_019843.3	+	8996	18605	9609	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2960	MERS-CoV	NC_019843.3	-	9274	9630	356	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2961	MERS-CoV	NC_019843.3	-	9365	11041	1676	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2962	MERS-CoV	NC_019843.3	-	9365	13056	3691	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2963	MERS-CoV	NC_019843.3	-	9541	29869	20328	13.14094292	150.0	NA	Calu-3
vc_MERS-CoV_2964	MERS-CoV	NC_019843.3	-	9801	17306	7505	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_2965	MERS-CoV	NC_019843.3	-	9803	25243	15440	1.226488006	14.0	NA	Calu-3
vc_MERS-CoV_2966	MERS-CoV	NC_019843.3	+	10077	10291	214	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2967	MERS-CoV	NC_019843.3	+	10077	10369	292	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2968	MERS-CoV	NC_019843.3	+	10360	11595	1235	0.788456575	9.0	orf1ab	Calu-3
vc_MERS-CoV_2969	MERS-CoV	NC_019843.3	+	10469	11772	1303	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_2970	MERS-CoV	NC_019843.3	-	10693	10965	272	1.839732009	21.0	NA	Calu-3
vc_MERS-CoV_2971	MERS-CoV	NC_019843.3	-	10693	11154	461	1.489306864	17.0	NA	Calu-3
vc_MERS-CoV_2972	MERS-CoV	NC_019843.3	-	10834	11628	794	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2973	MERS-CoV	NC_019843.3	-	10958	11154	196	2.27776344	26.0	NA	Calu-3
vc_MERS-CoV_2974	MERS-CoV	NC_019843.3	-	11122	11630	508	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2975	MERS-CoV	NC_019843.3	-	11132	11352	220	2.014944581	23.0	NA	Calu-3
vc_MERS-CoV_2976	MERS-CoV	NC_019843.3	-	11132	11397	265	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2977	MERS-CoV	NC_019843.3	-	11132	11431	299	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2978	MERS-CoV	NC_019843.3	-	11132	12428	1296	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_2979	MERS-CoV	NC_019843.3	-	11132	12446	1314	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_2980	MERS-CoV	NC_019843.3	-	11132	12503	1371	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_2981	MERS-CoV	NC_019843.3	-	11132	13176	2044	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_2982	MERS-CoV	NC_019843.3	-	11132	13878	2746	1.314094292	15.0	NA	Calu-3
vc_MERS-CoV_2983	MERS-CoV	NC_019843.3	-	11132	14611	3479	1.051275434	12.0	NA	Calu-3
vc_MERS-CoV_2984	MERS-CoV	NC_019843.3	-	11132	23805	12673	4.905952024	56.0	NA	Calu-3
vc_MERS-CoV_2985	MERS-CoV	NC_019843.3	-	11141	11352	211	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_2986	MERS-CoV	NC_019843.3	-	11201	11727	526	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_2987	MERS-CoV	NC_019843.3	-	11252	11611	359	1.401700578	16.0	NA	Calu-3
vc_MERS-CoV_2988	MERS-CoV	NC_019843.3	-	11252	11727	475	0.525637717	6.0	NA	Calu-3
vc_MERS-CoV_2989	MERS-CoV	NC_019843.3	-	11295	12094	799	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2990	MERS-CoV	NC_019843.3	+	11331	11595	264	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_2991	MERS-CoV	NC_019843.3	-	11640	11994	354	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2992	MERS-CoV	NC_019843.3	+	11679	12681	1002	0.963669148	11.0	orf1ab	Calu-3
vc_MERS-CoV_2993	MERS-CoV	NC_019843.3	+	11679	14248	2569	0.438031431	5.0	orf1ab	Calu-3
vc_MERS-CoV_2994	MERS-CoV	NC_019843.3	+	11773	12342	569	3.241432587	37.0	orf1ab	Calu-3
vc_MERS-CoV_2995	MERS-CoV	NC_019843.3	-	11788	12435	647	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_2996	MERS-CoV	NC_019843.3	+	11799	12337	538	9.811904047	112.0	orf1ab	Calu-3
vc_MERS-CoV_2997	MERS-CoV	NC_019843.3	-	12095	12513	418	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_2998	MERS-CoV	NC_019843.3	-	12095	12639	544	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_2999	MERS-CoV	NC_019843.3	-	12095	22703	10608	2.365369726	27.0	NA	Calu-3
vc_MERS-CoV_3000	MERS-CoV	NC_019843.3	+	12183	12337	154	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_3001	MERS-CoV	NC_019843.3	-	12412	22132	9720	1.57691315	18.0	NA	Calu-3
vc_MERS-CoV_3002	MERS-CoV	NC_019843.3	-	12676	12874	198	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3003	MERS-CoV	NC_019843.3	-	12757	13308	551	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3004	MERS-CoV	NC_019843.3	-	12862	13070	208	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3005	MERS-CoV	NC_019843.3	+	13093	20138	7045	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_3006	MERS-CoV	NC_019843.3	-	13573	13748	175	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3007	MERS-CoV	NC_019843.3	+	13579	13859	280	1.57691315	18.0	orf1ab	Calu-3
vc_MERS-CoV_3008	MERS-CoV	NC_019843.3	-	13959	29148	15189	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3009	MERS-CoV	NC_019843.3	-	14045	14611	566	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3010	MERS-CoV	NC_019843.3	-	14091	22703	8612	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3011	MERS-CoV	NC_019843.3	+	14691	15225	534	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_3012	MERS-CoV	NC_019843.3	+	14691	15235	544	1.57691315	18.0	orf1ab	Calu-3
vc_MERS-CoV_3013	MERS-CoV	NC_019843.3	-	15362	15655	293	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3014	MERS-CoV	NC_019843.3	-	15497	15650	153	4.99355831	57.0	NA	Calu-3
vc_MERS-CoV_3015	MERS-CoV	NC_019843.3	-	16487	28755	12268	0.525637717	6.0	NA	Calu-3
vc_MERS-CoV_3016	MERS-CoV	NC_019843.3	+	16503	16847	344	5.694408599	65.0	orf1ab	Calu-3
vc_MERS-CoV_3017	MERS-CoV	NC_019843.3	+	16518	16702	184	2.891007443	33.0	orf1ab	Calu-3
vc_MERS-CoV_3018	MERS-CoV	NC_019843.3	+	16531	17044	513	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_3019	MERS-CoV	NC_019843.3	-	16540	17303	763	0.700850289	8.0	NA	Calu-3
vc_MERS-CoV_3020	MERS-CoV	NC_019843.3	-	16552	16892	340	0.788456575	9.0	NA	Calu-3
vc_MERS-CoV_3021	MERS-CoV	NC_019843.3	-	16630	16892	262	0.525637717	6.0	NA	Calu-3
vc_MERS-CoV_3022	MERS-CoV	NC_019843.3	-	16701	18059	1358	0.788456575	9.0	NA	Calu-3
vc_MERS-CoV_3023	MERS-CoV	NC_019843.3	+	16872	17222	350	1.051275434	12.0	orf1ab	Calu-3
vc_MERS-CoV_3024	MERS-CoV	NC_019843.3	+	16872	17274	402	0.438031431	5.0	orf1ab	Calu-3
vc_MERS-CoV_3025	MERS-CoV	NC_019843.3	-	16909	17293	384	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3026	MERS-CoV	NC_019843.3	-	16909	21082	4173	1.927338295	22.0	NA	Calu-3
vc_MERS-CoV_3027	MERS-CoV	NC_019843.3	-	16909	26342	9433	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3028	MERS-CoV	NC_019843.3	-	16957	17306	349	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3029	MERS-CoV	NC_019843.3	+	17242	17418	176	0.350425145	4.0	orf1ab	Calu-3
vc_MERS-CoV_3030	MERS-CoV	NC_019843.3	-	17347	19331	1984	1.752125723	20.0	NA	Calu-3
vc_MERS-CoV_3031	MERS-CoV	NC_019843.3	-	17347	22359	5012	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3032	MERS-CoV	NC_019843.3	+	17524	19631	2107	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_3033	MERS-CoV	NC_019843.3	-	17885	18127	242	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3034	MERS-CoV	NC_019843.3	+	19227	19574	347	2.452976012	28.0	orf1ab	Calu-3
vc_MERS-CoV_3035	MERS-CoV	NC_019843.3	-	19311	19715	404	3.066220015	35.0	NA	Calu-3
vc_MERS-CoV_3036	MERS-CoV	NC_019843.3	-	19311	19757	446	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3037	MERS-CoV	NC_019843.3	+	19575	19897	322	0.262818858	3.0	orf1ab	Calu-3
vc_MERS-CoV_3038	MERS-CoV	NC_019843.3	-	19586	19733	147	1.401700578	16.0	NA	Calu-3
vc_MERS-CoV_3039	MERS-CoV	NC_019843.3	+	20376	21100	724	0.350425145	4.0	orf1ab	Calu-3
vc_MERS-CoV_3040	MERS-CoV	NC_019843.3	-	20495	20786	291	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3041	MERS-CoV	NC_019843.3	-	20495	20977	482	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3042	MERS-CoV	NC_019843.3	+	20513	20800	287	0.438031431	5.0	orf1ab	Calu-3
vc_MERS-CoV_3043	MERS-CoV	NC_019843.3	+	20522	20717	195	0.175212572	2.0	orf1ab	Calu-3
vc_MERS-CoV_3044	MERS-CoV	NC_019843.3	+	20522	20907	385	0.613244003	7.0	orf1ab	Calu-3
vc_MERS-CoV_3045	MERS-CoV	NC_019843.3	+	20576	22213	1637	3.066220015	35.0	orf1ab;S	Calu-3
vc_MERS-CoV_3046	MERS-CoV	NC_019843.3	-	20584	21008	424	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3047	MERS-CoV	NC_019843.3	-	20584	29649	9065	6.920896605	79.0	NA	Calu-3
vc_MERS-CoV_3048	MERS-CoV	NC_019843.3	-	20591	21082	491	0.700850289	8.0	NA	Calu-3
vc_MERS-CoV_3049	MERS-CoV	NC_019843.3	-	20666	20921	255	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3050	MERS-CoV	NC_019843.3	-	20666	21139	473	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3051	MERS-CoV	NC_019843.3	-	20666	21219	553	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3052	MERS-CoV	NC_019843.3	-	20666	29869	9203	16.03195036	183.0	NA	Calu-3
vc_MERS-CoV_3053	MERS-CoV	NC_019843.3	-	20693	22168	1475	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3054	MERS-CoV	NC_019843.3	+	21225	21504	279	0.613244003	7.0	orf1ab;S	Calu-3
vc_MERS-CoV_3055	MERS-CoV	NC_019843.3	+	21322	21551	229	0.262818858	3.0	orf1ab;S	Calu-3
vc_MERS-CoV_3056	MERS-CoV	NC_019843.3	+	21350	21672	322	0.438031431	5.0	orf1ab;S	Calu-3
vc_MERS-CoV_3057	MERS-CoV	NC_019843.3	+	21469	21915	446	0.175212572	2.0	orf1ab;S	Calu-3
vc_MERS-CoV_3058	MERS-CoV	NC_019843.3	+	21552	21911	359	0.700850289	8.0	S	Calu-3
vc_MERS-CoV_3059	MERS-CoV	NC_019843.3	+	21552	22210	658	0.350425145	4.0	S	Calu-3
vc_MERS-CoV_3060	MERS-CoV	NC_019843.3	-	21836	22134	298	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3061	MERS-CoV	NC_019843.3	-	21836	22973	1137	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3062	MERS-CoV	NC_019843.3	-	22061	22616	555	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3063	MERS-CoV	NC_019843.3	-	22061	22998	937	1.314094292	15.0	NA	Calu-3
vc_MERS-CoV_3064	MERS-CoV	NC_019843.3	-	22169	22419	250	1.226488006	14.0	NA	Calu-3
vc_MERS-CoV_3065	MERS-CoV	NC_019843.3	-	22248	25555	3307	12.70291149	145.0	NA	Calu-3
vc_MERS-CoV_3066	MERS-CoV	NC_019843.3	-	22304	22697	393	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3067	MERS-CoV	NC_019843.3	+	22594	22994	400	2.365369726	27.0	S	Calu-3
vc_MERS-CoV_3068	MERS-CoV	NC_019843.3	+	22594	23054	460	1.57691315	18.0	S	Calu-3
vc_MERS-CoV_3069	MERS-CoV	NC_019843.3	+	22594	23283	689	41.0873482	469.0	S	Calu-3
vc_MERS-CoV_3070	MERS-CoV	NC_019843.3	+	22594	23415	821	2.27776344	26.0	S	Calu-3
vc_MERS-CoV_3071	MERS-CoV	NC_019843.3	-	22615	22920	305	0.788456575	9.0	NA	Calu-3
vc_MERS-CoV_3072	MERS-CoV	NC_019843.3	-	22615	25243	2628	1.051275434	12.0	NA	Calu-3
vc_MERS-CoV_3073	MERS-CoV	NC_019843.3	+	22641	22852	211	0.438031431	5.0	S	Calu-3
vc_MERS-CoV_3074	MERS-CoV	NC_019843.3	-	22705	22970	265	2.190157153	25.0	NA	Calu-3
vc_MERS-CoV_3075	MERS-CoV	NC_019843.3	-	22727	22916	189	0.525637717	6.0	NA	Calu-3
vc_MERS-CoV_3076	MERS-CoV	NC_019843.3	-	22800	22948	148	0.700850289	8.0	NA	Calu-3
vc_MERS-CoV_3077	MERS-CoV	NC_019843.3	-	22917	23133	216	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3078	MERS-CoV	NC_019843.3	-	22917	23276	359	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3079	MERS-CoV	NC_019843.3	-	22917	23603	686	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3080	MERS-CoV	NC_019843.3	-	22947	23583	636	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3081	MERS-CoV	NC_019843.3	-	22999	25194	2195	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3082	MERS-CoV	NC_019843.3	+	23104	23295	191	0.175212572	2.0	S	Calu-3
vc_MERS-CoV_3083	MERS-CoV	NC_019843.3	+	23104	23620	516	0.438031431	5.0	S	Calu-3
vc_MERS-CoV_3084	MERS-CoV	NC_019843.3	-	23158	23471	313	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3085	MERS-CoV	NC_019843.3	-	23158	23514	356	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3086	MERS-CoV	NC_019843.3	+	23580	23762	182	0.175212572	2.0	S	Calu-3
vc_MERS-CoV_3087	MERS-CoV	NC_019843.3	-	23680	24303	623	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3088	MERS-CoV	NC_019843.3	-	24043	24261	218	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3089	MERS-CoV	NC_019843.3	+	24178	24698	520	6.658077746	76.0	S	Calu-3
vc_MERS-CoV_3090	MERS-CoV	NC_019843.3	-	24376	24829	453	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3091	MERS-CoV	NC_019843.3	-	24413	25616	1203	0.525637717	6.0	NA	Calu-3
vc_MERS-CoV_3092	MERS-CoV	NC_019843.3	+	24420	28107	3687	0.525637717	6.0	S;orf3;orf4a;orf4b;orf5;E;M	Calu-3
vc_MERS-CoV_3093	MERS-CoV	NC_019843.3	+	24645	25079	434	0.175212572	2.0	S	Calu-3
vc_MERS-CoV_3094	MERS-CoV	NC_019843.3	-	24894	25243	349	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3095	MERS-CoV	NC_019843.3	+	24900	25067	167	0.175212572	2.0	S	Calu-3
vc_MERS-CoV_3096	MERS-CoV	NC_019843.3	-	24987	25280	293	2.190157153	25.0	NA	Calu-3
vc_MERS-CoV_3097	MERS-CoV	NC_019843.3	-	24987	25290	303	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3098	MERS-CoV	NC_019843.3	-	25036	25238	202	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_3099	MERS-CoV	NC_019843.3	-	25036	25368	332	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3100	MERS-CoV	NC_019843.3	+	25041	25464	423	0.262818858	3.0	S	Calu-3
vc_MERS-CoV_3101	MERS-CoV	NC_019843.3	-	25049	25573	524	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3102	MERS-CoV	NC_019843.3	-	25049	29163	4114	3.066220015	35.0	NA	Calu-3
vc_MERS-CoV_3103	MERS-CoV	NC_019843.3	+	25080	25464	384	0.175212572	2.0	S	Calu-3
vc_MERS-CoV_3104	MERS-CoV	NC_019843.3	+	25190	25784	594	0.262818858	3.0	S;orf3	Calu-3
vc_MERS-CoV_3105	MERS-CoV	NC_019843.3	-	25195	25396	201	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3106	MERS-CoV	NC_019843.3	-	25195	25606	411	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3107	MERS-CoV	NC_019843.3	-	25195	25802	607	0.788456575	9.0	NA	Calu-3
vc_MERS-CoV_3108	MERS-CoV	NC_019843.3	-	25244	25577	333	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3109	MERS-CoV	NC_019843.3	-	25244	25606	362	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3110	MERS-CoV	NC_019843.3	-	25244	25637	393	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3111	MERS-CoV	NC_019843.3	-	25434	25849	415	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3112	MERS-CoV	NC_019843.3	-	25548	25802	254	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3113	MERS-CoV	NC_019843.3	-	25551	25769	218	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3114	MERS-CoV	NC_019843.3	-	25591	25813	222	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_3115	MERS-CoV	NC_019843.3	-	25591	26124	533	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3116	MERS-CoV	NC_019843.3	-	25605	25864	259	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3117	MERS-CoV	NC_019843.3	-	25669	26757	1088	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3118	MERS-CoV	NC_019843.3	+	25749	26008	259	0.525637717	6.0	orf3;orf4a	Calu-3
vc_MERS-CoV_3119	MERS-CoV	NC_019843.3	-	25792	27157	1365	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3120	MERS-CoV	NC_019843.3	-	25804	26124	320	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3121	MERS-CoV	NC_019843.3	-	25804	27187	1383	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3122	MERS-CoV	NC_019843.3	-	25894	26648	754	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3123	MERS-CoV	NC_019843.3	-	25894	26837	943	0.963669148	11.0	NA	Calu-3
vc_MERS-CoV_3124	MERS-CoV	NC_019843.3	-	25904	26380	476	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3125	MERS-CoV	NC_019843.3	-	25904	27058	1154	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3126	MERS-CoV	NC_019843.3	+	26056	26640	584	0.175212572	2.0	orf4a;orf4b	Calu-3
vc_MERS-CoV_3127	MERS-CoV	NC_019843.3	-	26059	26395	336	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3128	MERS-CoV	NC_019843.3	-	26125	26520	395	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3129	MERS-CoV	NC_019843.3	-	26125	29649	3524	0.963669148	11.0	NA	Calu-3
vc_MERS-CoV_3130	MERS-CoV	NC_019843.3	-	26179	26517	338	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3131	MERS-CoV	NC_019843.3	-	26231	26389	158	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3132	MERS-CoV	NC_019843.3	-	26231	26757	526	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3133	MERS-CoV	NC_019843.3	-	26231	27633	1402	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_3134	MERS-CoV	NC_019843.3	-	26231	28757	2526	3.591857732	41.0	NA	Calu-3
vc_MERS-CoV_3135	MERS-CoV	NC_019843.3	-	26250	26738	488	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3136	MERS-CoV	NC_019843.3	-	26254	26517	263	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_3137	MERS-CoV	NC_019843.3	-	26343	26646	303	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3138	MERS-CoV	NC_019843.3	-	26343	26738	395	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3139	MERS-CoV	NC_019843.3	-	26343	27051	708	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3140	MERS-CoV	NC_019843.3	-	26358	26891	533	0.700850289	8.0	NA	Calu-3
vc_MERS-CoV_3141	MERS-CoV	NC_019843.3	-	26677	27407	730	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3142	MERS-CoV	NC_019843.3	+	26826	27239	413	1.13888172	13.0	orf4b;orf5	Calu-3
vc_MERS-CoV_3143	MERS-CoV	NC_019843.3	+	26826	27317	491	1.051275434	12.0	orf4b;orf5	Calu-3
vc_MERS-CoV_3144	MERS-CoV	NC_019843.3	-	26835	27257	422	0.876062861	10.0	NA	Calu-3
vc_MERS-CoV_3145	MERS-CoV	NC_019843.3	+	26886	27224	338	5.957227457	68.0	orf5	Calu-3
vc_MERS-CoV_3146	MERS-CoV	NC_019843.3	+	26886	27239	353	3.416645159	39.0	orf5	Calu-3
vc_MERS-CoV_3147	MERS-CoV	NC_019843.3	-	27159	27845	686	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3148	MERS-CoV	NC_019843.3	-	27221	27856	635	0.525637717	6.0	NA	Calu-3
vc_MERS-CoV_3149	MERS-CoV	NC_019843.3	+	27247	27673	426	0.175212572	2.0	orf5;E	Calu-3
vc_MERS-CoV_3150	MERS-CoV	NC_019843.3	-	27358	27845	487	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3151	MERS-CoV	NC_019843.3	-	27445	27814	369	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3152	MERS-CoV	NC_019843.3	+	27609	28001	392	0.262818858	3.0	E;M	Calu-3
vc_MERS-CoV_3153	MERS-CoV	NC_019843.3	-	27649	27845	196	1.13888172	13.0	NA	Calu-3
vc_MERS-CoV_3154	MERS-CoV	NC_019843.3	-	28294	28757	463	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3155	MERS-CoV	NC_019843.3	-	28585	28844	259	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3156	MERS-CoV	NC_019843.3	-	28632	28788	156	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3157	MERS-CoV	NC_019843.3	-	28632	29219	587	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3158	MERS-CoV	NC_019843.3	-	28632	29742	1110	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3159	MERS-CoV	NC_019843.3	-	28685	29109	424	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3160	MERS-CoV	NC_019843.3	-	28685	29466	781	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3161	MERS-CoV	NC_019843.3	-	28733	29644	911	11.3888172	130.0	NA	Calu-3
vc_MERS-CoV_3162	MERS-CoV	NC_019843.3	-	28741	29079	338	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3163	MERS-CoV	NC_019843.3	-	28756	29301	545	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3164	MERS-CoV	NC_019843.3	-	28756	29466	710	0.262818858	3.0	NA	Calu-3
vc_MERS-CoV_3165	MERS-CoV	NC_019843.3	-	28756	30038	1282	1.314094292	15.0	NA	Calu-3
vc_MERS-CoV_3166	MERS-CoV	NC_019843.3	-	28869	29244	375	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3167	MERS-CoV	NC_019843.3	-	28880	29109	229	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3168	MERS-CoV	NC_019843.3	-	28880	29148	268	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3169	MERS-CoV	NC_019843.3	-	28880	29163	283	0.438031431	5.0	NA	Calu-3
vc_MERS-CoV_3170	MERS-CoV	NC_019843.3	-	28885	29175	290	2.891007443	33.0	NA	Calu-3
vc_MERS-CoV_3171	MERS-CoV	NC_019843.3	-	28952	29703	751	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3172	MERS-CoV	NC_019843.3	-	28967	29384	417	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3173	MERS-CoV	NC_019843.3	-	28976	29175	199	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3174	MERS-CoV	NC_019843.3	-	29027	29549	522	4.555526879	52.0	NA	Calu-3
vc_MERS-CoV_3175	MERS-CoV	NC_019843.3	+	29031	29169	138	4.029889162	46.0	N;orf8b	Calu-3
vc_MERS-CoV_3176	MERS-CoV	NC_019843.3	+	29031	29340	309	0.525637717	6.0	N;orf8b	Calu-3
vc_MERS-CoV_3177	MERS-CoV	NC_019843.3	+	29031	29554	523	0.525637717	6.0	N;orf8b	Calu-3
vc_MERS-CoV_3178	MERS-CoV	NC_019843.3	+	29105	29400	295	0.438031431	5.0	N	Calu-3
vc_MERS-CoV_3179	MERS-CoV	NC_019843.3	+	29131	29733	602	0.525637717	6.0	N	Calu-3
vc_MERS-CoV_3180	MERS-CoV	NC_019843.3	+	29170	29724	554	0.262818858	3.0	N	Calu-3
vc_MERS-CoV_3181	MERS-CoV	NC_019843.3	+	29170	29983	813	0.438031431	5.0	N	Calu-3
vc_MERS-CoV_3182	MERS-CoV	NC_019843.3	+	29197	29340	143	0.350425145	4.0	N	Calu-3
vc_MERS-CoV_3183	MERS-CoV	NC_019843.3	+	29197	29838	641	2.628188584	30.0	N	Calu-3
vc_MERS-CoV_3184	MERS-CoV	NC_019843.3	+	29197	29964	767	4.292708021	49.0	N	Calu-3
vc_MERS-CoV_3185	MERS-CoV	NC_019843.3	-	29206	29538	332	2.365369726	27.0	NA	Calu-3
vc_MERS-CoV_3186	MERS-CoV	NC_019843.3	-	29211	29466	255	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3187	MERS-CoV	NC_019843.3	-	29385	29635	250	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3188	MERS-CoV	NC_019843.3	-	29385	29947	562	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3189	MERS-CoV	NC_019843.3	+	29391	29872	481	1.401700578	16.0	N	Calu-3
vc_MERS-CoV_3190	MERS-CoV	NC_019843.3	+	29391	29964	573	2.452976012	28.0	N	Calu-3
vc_MERS-CoV_3191	MERS-CoV	NC_019843.3	-	29471	29649	178	4.99355831	57.0	NA	Calu-3
vc_MERS-CoV_3192	MERS-CoV	NC_019843.3	+	29477	29902	425	0.788456575	9.0	N	Calu-3
vc_MERS-CoV_3193	MERS-CoV	NC_019843.3	-	29506	30090	584	0.175212572	2.0	NA	Calu-3
vc_MERS-CoV_3194	MERS-CoV	NC_019843.3	-	29520	29709	189	0.613244003	7.0	NA	Calu-3
vc_MERS-CoV_3195	MERS-CoV	NC_019843.3	+	29604	29921	317	42.83947392	489.0	N	Calu-3
vc_MERS-CoV_3196	MERS-CoV	NC_019843.3	+	29613	29964	351	0.262818858	3.0	N	Calu-3
vc_MERS-CoV_3197	MERS-CoV	NC_019843.3	-	29710	29859	149	0.350425145	4.0	NA	Calu-3
vc_MERS-CoV_3198	MERS-CoV	NC_019843.3	+	29734	29872	138	0.438031431	5.0	N	Calu-3